Gene Lcho_3998 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3998 
SymbolrplD 
ID6160827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4480316 
End bp4480936 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content61% 
IMG OID641666776 
Product50S ribosomal protein L4 
Protein accessionYP_001793017 
Protein GI171060668 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00000169649 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAGCTCG AGCTCCTGAA CGAGCAGGGC CAGGCCACCG CCAAGGTGGA TGCTCCTGAC 
ACCGTGTTCG CACGTGACTA CAACGAATCG CTGATCCATC AGATCGTGGT GGCCTACCAG 
GCCAACGCCC GTCAAGGCAC CCGCGCTCAG AAGGATCGTG AGCAGGTTCA CCACTCGACC 
AAGAAGCCGT TCCGCCAGAA GGGTACCGGC CGCGCTCGTG CCGGTATGAC GTCTTCGCCT 
CTGTGGCGTG GCGGTGGTCG GATCTTCCCG AACAGCCCGG ACGAGAACTT CACCCAGAAG 
GTCAACAAGA AGATGTATCG CGCCGGCATG GCGTCGATCT TCTCGCAGCT GGCTCGCGAA 
GGCCGTCTGG CCGTGATCGA CTCGATCACG CTCGACGCAC CCAAGACCAA GCTGCTGGCC 
GCCAAGCTGA AGGCCATGAA CCTCGATCAC GTGCTGGTGA TTGCCGACGA GGTCGACGAG 
AACCTGTTTC TCGCCTCGCG CAATCTGGCC AACGTGCTGG TGGTTGAGCC GCGTTATGCC 
GATCCGCTGT CGCTGGTCTT CTACAAGAAG ATCCTGGTGA CCAAGGCTGC GATCGACAAG 
CTGCAGGAGA TGTTCGCATG A
 
Protein sequence
MQLELLNEQG QATAKVDAPD TVFARDYNES LIHQIVVAYQ ANARQGTRAQ KDREQVHHST 
KKPFRQKGTG RARAGMTSSP LWRGGGRIFP NSPDENFTQK VNKKMYRAGM ASIFSQLARE 
GRLAVIDSIT LDAPKTKLLA AKLKAMNLDH VLVIADEVDE NLFLASRNLA NVLVVEPRYA 
DPLSLVFYKK ILVTKAAIDK LQEMFA