| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3994 |
|---|
| Symbol | |
|---|
| ID | 6160823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4478533 |
|---|
| End bp | 4478862 |
|---|
| Gene Length | 330 bp |
|---|
| Protein Length | 109 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641666772 |
|---|
| Product | ribosomal protein L22 |
|---|
| Protein accession | YP_001793013 |
|---|
| Protein GI | 171060664 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0091] Ribosomal protein L22 |
|---|
| TIGRFAM ID | [TIGR01044] ribosomal protein L22, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.00000855576 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCC AAGCAATCGT CCGTGGTGTT CGTCTGTCAT GTGACAAGGG CCGTCTGGTC
GCGGATCTGA TCCGTGGCAA GAAGGTCGGT CTCGCGCTCG ACATCCTCAC CTTCACGCAA
AAGAAGGCTG CCGGCATCAT CAAGAAGGCG CTCGAAAGCG CCATCGCGAA CGCCGAACAC
AACGACGGCG CAGACATCGA TGAACTGCGC GTCACCTCGA TCTACGTGGA GCAAGGTGCC
ACGCTGAAGC GTTTCTCTGC CCGGGCCAAG GGCCGTGGCA ATCGCATCAG CAAGCCCACC
GCGCACATCT ACGTGACCGT TGGCAACTGA
|
|---|
| Protein sequence | METQAIVRGV RLSCDKGRLV ADLIRGKKVG LALDILTFTQ KKAAGIIKKA LESAIANAEH
NDGADIDELR VTSIYVEQGA TLKRFSARAK GRGNRISKPT AHIYVTVGN
|
|---|
| |