Gene Lcho_3978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3978 
Symbol 
ID6161965 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4464979 
End bp4465602 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content71% 
IMG OID641666756 
Producthypothetical protein 
Protein accessionYP_001792997 
Protein GI171060648 
COG category[R] General function prediction only 
COG ID[COG3150] Predicted esterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00232425 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCATCCG GAGGGGCCGA CGCCTGCGCG GTCGGCGTGA CGCACCTGCT GTATCTGCAC 
GGCTTCCGCT CGTCGCCGCA GTCGTTCAAG GCCCGGCGCA TGGCCGACTG GATGCGCACG 
CACCGGCCCG ACGTGCAGTG GTGGTGCCCG CAGCTGCCGC CCTCGCCGCA GGCGGCGGCC 
GAGCGGCTGC TCGACGGTGT CAAAGACTGG CCGGCCGACC GCAGCGCCGT GATCGGCAGC 
TCGCTCGGCG GCTTCTACGC CACCGTGCTG GCCGAGCGGC TGGGCTGGCC GGCGGTGCTG 
ATCAACCCGG CCGTCGAGCC GGCGCGCGAC CTGGCGCGCC ACATCGGCGA GCAGACCAGC 
TGGCACGACC CGCAGGATCA TTTCTTCTTC CGCGCCGAAT TCATCGACGA GTTGCGCGCC 
CTGCGCCCCG CCGCGCTGAG CCGCCCGCAG CGCTACCTGG CCGTGATCGC AAAAGGCGAC 
GAGGTGCTCG ACTGGCGCGA GATGCAAGCG CGTTACGCCG ACACGCAGAT CCGCCTGATC 
GACGGCAGCG ACCACGCGCT GAGCGATTTC GACATCCACC TGCCGCAGAT CCTGCAGTTC 
CTCGGGCTCG ATCGCGCCGC CTGA
 
Protein sequence
MASGGADACA VGVTHLLYLH GFRSSPQSFK ARRMADWMRT HRPDVQWWCP QLPPSPQAAA 
ERLLDGVKDW PADRSAVIGS SLGGFYATVL AERLGWPAVL INPAVEPARD LARHIGEQTS 
WHDPQDHFFF RAEFIDELRA LRPAALSRPQ RYLAVIAKGD EVLDWREMQA RYADTQIRLI 
DGSDHALSDF DIHLPQILQF LGLDRAA