| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3977 |
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| Symbol | |
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| ID | 6161964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4463534 |
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| End bp | 4464976 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666755 |
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| Product | UDP-N-acetylmuramate |
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| Protein accession | YP_001792996 |
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| Protein GI | 171060647 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
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| TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00184936 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACATCC ACATTCTCGG CATTTGCGGC ACCTTCATGG GCGGCCTGGC GGCGCTGGCG
CGCGAGGCCG GCCACCGCGT CACCGGCTGC GATGCCAACG TCTACCCGCC GATGAGCGAC
CAGCTGCGCG CACTCGGCAT CGAGCTGATC GAGGGCTGGG GCGTCGACCA GCTCGCGCTC
GCGCCCGACC TCTACGTGGT CGGCAACGTG GTGAGCCGCG GCAACCCGCT GATGGAGGCC
ATCCTCGACG CCGGCGCGCC CTACACCAGC GGGCCGCAGT GGCTGGCCGA ACACGTGCTG
CAAGGCCGTC ACGTGCTGGC GGTGGCCGGC ACCCACGGCA AGACCACCAC CACCTCGATG
CTGGCCTGGA TCCTCGAAGC CGCCGGGCTG CAGCCGGGTT TCCTGGTCGG CGGCGTGCCG
CAGAACTTCG GCGTCTCGGC GCGGCTGGGT CGGATCGGGC GCCCGAGCGC CGCCGGGCCG
TCCCAAGGCG CGAGCGCCCC CGCGGGGGGC AGCGAAGCGC ACGCAGTGGC GAGCGTGGGG
GCTCCTTTCG TCATTGAAGC GGACGAATAC GACACCGCCT TCTTCGACAA GCGCAGCAAG
TTCGTGCACT ACCGGCCGCG CACCGCGATC CTGAACAACC TCGAATACGA CCACGCCGAC
ATCTTTGCGG ACCTGGCGGC GATCGAGACC CAGTTCCACC ACCTCGTGCG CACCGTGCCG
GCCAAGGGCC GGCTGGTGGT GAACCAGCGC GAGGACAGCC TGCGGCGCGT GCTCGAACGC
GGCTGCTGGA GCGAGGTGCA CTACTTCGGC GCCCGCAAGG AAACCCCCGG CGCCTTGCGC
TCGCGCGGCG AGCCGCATGC GTTCGACGTG CTGCGCGGCA GCCTCAAGGT GGCCCGCGTC
GAGTGGGGCC TGCTCGGCGA GCACAACCAG CTCAACGCGC TGGCCGCGAT CGCCGCGGCC
GAGCACGTGG GCGTCAGCCC GGCCGACGCC GGCGCGGCTC TGGGCCGCTT CGAGAACGTG
CGCCGCCGGC TCGAGCTGCG TGGCGAGGCG AGTGGCGTCA AGGTCTACGA CGACTTCGCG
CACCACCCGA CCGCGATCCA CACCACCGTC AACGGCCTGC GCCGCAAGGT CGGCGTGGCG
CGCATCCTGG CGGTGTTCGA GCCGCGCTCC AACACCATGA AGCTCGGCAC GATGGCCTCG
CAGCTGCCGT GGGCGCTGGA AGAAGCCGAC CTGTCGTTCT GCCACAGCGG CGGGCTGGGC
TGGGACGCCG CCGCGGCGCT GGTGCCACTG GGCGAGCAGG CGCAGGTGCA CGACAGCATC
GAGCGCCTGG TCGCCGCCGT GGTGCGCGCG GCCCGGCCGG GCGATCACAT CCTGTGCATG
AGCAACGGCG GTTTCGGCGG CGTGCACGCC AAGCTGCTGG AAGCGCTCGC CGCACGCGCG
TGA
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| Protein sequence | MHIHILGICG TFMGGLAALA REAGHRVTGC DANVYPPMSD QLRALGIELI EGWGVDQLAL
APDLYVVGNV VSRGNPLMEA ILDAGAPYTS GPQWLAEHVL QGRHVLAVAG THGKTTTTSM
LAWILEAAGL QPGFLVGGVP QNFGVSARLG RIGRPSAAGP SQGASAPAGG SEAHAVASVG
APFVIEADEY DTAFFDKRSK FVHYRPRTAI LNNLEYDHAD IFADLAAIET QFHHLVRTVP
AKGRLVVNQR EDSLRRVLER GCWSEVHYFG ARKETPGALR SRGEPHAFDV LRGSLKVARV
EWGLLGEHNQ LNALAAIAAA EHVGVSPADA GAALGRFENV RRRLELRGEA SGVKVYDDFA
HHPTAIHTTV NGLRRKVGVA RILAVFEPRS NTMKLGTMAS QLPWALEEAD LSFCHSGGLG
WDAAAALVPL GEQAQVHDSI ERLVAAVVRA ARPGDHILCM SNGGFGGVHA KLLEALAARA
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