| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3976 |
|---|
| Symbol | |
|---|
| ID | 6161963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4462390 |
|---|
| End bp | 4463478 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641666754 |
|---|
| Product | 6-phosphofructokinase |
|---|
| Protein accession | YP_001792995 |
|---|
| Protein GI | 171060646 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0205] 6-phosphofructokinase |
|---|
| TIGRFAM ID | [TIGR02483] phosphofructokinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.00297784 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGA CAACAGATTC CCAGAACCCC GCCCCGCGCA TCGGCGTGCT GACCGGCGGC
GGCGACTGTC CGGGACTGAA CGCGGTGATA CGCGCGGTCA CCAAATCGCT GATCTACCAG
TGCGGCGCCG AGGTGATCGG CGTCGAGGAC GGCTTCCTGG GCCTGATCGA ACACCGCGTG
CGCCCGCTCG ACTGGCGCTC GGTCAGCGAC ATCCTGGCCA CCGGCGGCAC GGTGCTCGGC
ACCAGCAACA CCGCCAGCCC GTTCGCCTGG CACGGCCAGG ACGTGTCGCA GGCCGTGCTC
GCCTACGCTC GCGAGCTCGG CCTGCAGGCG CTGGTGGCCA TCGGCGGCGA CGGCACCATG
ACGATGGCGC ACGGCCTGGC GCAGCGCGGC CTGCCGGTGG TCGGCGTGCC CAAGACGATC
GACAACGACA TCGCCCACAA CGAGCGCAGC TTCGGTTTCG ACACCGCGGT GGCCACCGTG
ACCGAGGCGC TCGAACGCGT GCAGACCACC GGCCAGAGCC ACGGTCGGGT CATGATCGTC
GAGACCATGG GCCGCTACGC CGGCTGGATC GCGCTGGAGG CCGGCATGGC CGGGGCGGCC
GACGTGATCC TGATTCCCGA GCTGCCCTAC AGCGTCGAGG CGATCGCGGC GGTCTGCCGT
GAGCGCTCGC GCGCTCGGCG CTGCACCGTG ATCTGCATCG CCGAAGGCGC CGCGGTGGCC
GGTGGCGGCA TGACCATCGA GCGCACCGTG GCCGACAGCC CCGATCCGCT GCGCCTGGGC
GGCGTCGGCC ATGTGCTGCG CGCGCAGCTG CAGCCGCTGA TCGAGGCCGA GGTGCGCGCC
ACGGTGCTCG GCCACGTGCA GCGCGGCGGC AGCCCGACGC CGTTCGACCG CGTGCTGGCC
ACGCAATACG GCAACGCCGC CGCCCAGCTG GTGCTGCGCG GCGAATACAA CCGCATGGTG
ACGCTGCAGC ACGGCGCGAT GACGAGCGTC GATCTCGCCA GCGTGGCTGG CCGCAACCGC
ACCGTGCCGA CCGACCACCC GCTGCTGGTG TGCGCGCGGC AGATCGGCGT CTGCCTGGGT
CAGGGTTGA
|
|---|
| Protein sequence | MSQTTDSQNP APRIGVLTGG GDCPGLNAVI RAVTKSLIYQ CGAEVIGVED GFLGLIEHRV
RPLDWRSVSD ILATGGTVLG TSNTASPFAW HGQDVSQAVL AYARELGLQA LVAIGGDGTM
TMAHGLAQRG LPVVGVPKTI DNDIAHNERS FGFDTAVATV TEALERVQTT GQSHGRVMIV
ETMGRYAGWI ALEAGMAGAA DVILIPELPY SVEAIAAVCR ERSRARRCTV ICIAEGAAVA
GGGMTIERTV ADSPDPLRLG GVGHVLRAQL QPLIEAEVRA TVLGHVQRGG SPTPFDRVLA
TQYGNAAAQL VLRGEYNRMV TLQHGAMTSV DLASVAGRNR TVPTDHPLLV CARQIGVCLG
QG
|
|---|
| |