Gene Lcho_3967 details

Gene Information

• Locus tag: Lcho_3967
• ID: 6162378
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 4447700
• End bp: 4454944
• Gene Length: 7245 bp
• Protein Length: 2414 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641666745
• Product: CheA signal transduction histidine kinase
• Protein accession: YP_001792986
• Protein GI: 171060637
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0643] Chemotaxis protein histidine kinase and related kinases; [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 0.0139967
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCAGATGG ATCCGCAACA CACCACCGCC GCCACTCCTG TCGCCGATGA CCTCAGCGCC 
CTGGCGTGGG TGCACGAGGA GTTGCGAAAG ACGCTCGAAC AGGCCCACAA GGGCCTGCGG 
CGCTATCTGC GCGAGGTCGA GGCGAGCGCC CATTCGGATC TCGACGACGT CGAGCCGACG 
ATCTTGCGCA ACGCCCGGCA ACATCTGCAT GAAGGTGTCG GTGCGCTGCA GCTCGTCAAC 
GTGCCCGAGG GCGCGCTGCT GCTGCGCGCC AGCGAGGCGG CGGTGCAGCG TTACGTCGCC 
AAGCCGCAGC GCATGGACAT GAAGGGTGTC GAGGCGGTCG AGCGGGCCTC TTTTGCCTTG 
CTCGACTACC TCGGCCGGCG CCTGTCGGGC AAGCCGGCGC CGGCGGTGGG CCTGTTCCCG 
CAGTTGCGCG TGCTGCTCGA GCTCAATGCC GCCGAGCGCA TCCATCCGGC CGACCTCTGG 
CCGCACGACT GGCGCTGGCG CGCCGTGCCG GCGCTGGCGA GCGTGCCGCA CGCGGCCGAT 
GCCGCGCTGC TGGCCGATGT CGAGCGCCGC ATGCTGGCGC TGGTCAAGCA GAACTCGCCC 
GAGGCTGCGG CCGCGTTGAC GCGGGCGTTC GGTGCGGTGG CCCTGGCGGC CGCGCCGGTC 
AGCCTGCAGG AGGCGACGCT GTGGTCGATC GCCGCCGGCT TCTTCGAGGC CTGGGGCCGC 
GGCCTGCTGG TGCCCGACCT GTTCCTCAAG CGCACCGCCT CGCGGGCGAT GGCGGCGATG 
CGCGCGCGGG TGCGCGGCGA TGCCGACGTC TCCGAGCGCC TGGCGCAGGA CCTGCTGTTC 
TTCTGCGAGC GTGCGGTGCC CGCGCCCGAC GCGCCGGCGC CGCATCTGGC GGCCGTGCGC 
ACGGCCTACC AGCTCGCCGA CGAGCCGGCG CCCGACTACA CCGAGCCGCG CTTCGGCCGC 
CACGATCCGT CGCTGATCCA GCAGGCCCGC AAGCGCGTCG TGTCCGCCAA GGAATCCTGG 
AACGGCGTGG CCGGCACCGA GCCGCAGCGG CTGGCCAACC TGGGCGAGAC CTTCGGCCTG 
GTCGGCGACT CGATGCGCAA GCTCTACGCC GGTGGCGGCC GGCTGGCCGA CGCGCTGGCG 
GCGGCGGCCG ATGTCACCGC GCGCCAGGCC CGTCCACCGG CGCCGCAGCT GGCGATGGAA 
GTCGCCACCA GCCTGCTGTA CCTGGAAGCC GCGCTCGACG AAGGTGAATT CGATCACCCC 
GATCAGGCCG AGCGGGCCGA ACGCCTGGCC CAGCGCATCG AGCGGGTCAC GGCGGGCGCC 
GCGGCCGAAC CGCTCGAACC CTGGATGGAA GAACTCTACC GCCGTGTCTC CGACCGCCAG 
ACCATGGGCA GCGTGGTGCA GGAACTGCGC GCCTCGCTGT CCGAGGTCGA GCGCCAGATC 
GACCAGTTCT TCCGCAGCCC GTCCGAAAGC GGCCTGCTGG CGGCGGTGCC CGATCAGCTG 
GCGTCGATGC GCGGCGTGTT CTCGGTGCTT GCCATCGCGC CGGCGATGCA GGCGGTCGCG 
CGCATGCGCA GCGATGTCGA GCAGCTGCTC CACGTCGATG CCGACCCGCG CAGCCAGGCC 
ACCCTGGCGA GCTTCCAGCG CCTGGCCGGC AACCTGGGCG CGCTCGGATT CCTGATCGAC 
ATGCTGAGCG TGCAGCCGCA GATGACCAAG CAGCTGTTCC GCTTCGACAT GCTCAACGGC 
GTGCTCGCGC CGGTGATGGG GCGCAGCGCG ATGGCGCCCG ATCTGGTCGA CCGCGCCCAG 
GCGATCGCCG ACGCGGTGCG CCGCAACGAG GTGCCGCTGG CGCAGGTGTC GGCCGAACTG 
GCGTCGCTGT CGCAGGAAGC CACGGTCAAC GACCAGCCGG CGCTGGCCGC CAGCCTCAGC 
TCGGCGCAGG CCGCGCTGTC GCAGGCCGCC GAAGCGGGGG CAGGCCGCGA CACCGAAGGC 
GCCGCGCGCG AATACGTCGC CCAGGCGATG GACGATTTCG TCGCCACCGC CACCAGCCCG 
ATGGGGCTCG ACCCGATCGG CCTGCCGATG ATCTCGCGGC CGATGGAGCT CGGCCCGGAA 
GACACCCCGG CGTTCGCGCC CACCGGCCTC GAAGACGACC ACGAGATGCG GGGAGTCTTC 
CTGGAAGAGT CGGCCGAGGT GCTGGCCGAC GCCCAGGCCG CGCTGGCCGA GCTGAACGTG 
TCGCCGTCCG ACCTGTCGGC CATGATCACC ACGCGGCGCG CCTTCCACAC CCTCAAGGGC 
AGCTCGCGCA TGGTGGGCTT CGCCGCCTTC GGCGAAGCGG CCTGGGCCTG CGAGCAGCTC 
TACAACCACG CGCTGGCCGA GCAGTCGCCC GCCAGCGCCG ACCTGCGCAC CTTCACCGGC 
GACGCGCTGG CGTATTTCGC GGCCTGGATC TCGGCCATCG GTCATGGCAC CGAGGCCCGT 
TTCACCCCCG ACCCGGTGAT GGCCGCGGCC GACACCCTGC GCCTGGCCGG CGAGCTGATG 
CGCGTGCACC TGCCGGGCGA GGAGGCGCCG TCGTCGCCGC CGCAGAGCGA CTACGGGCCG 
CTGTCCGACC TGATCGACCT CGAGGTGCCG TTCGGCGACA CCGGTGCGCC GGTGGTCGAG 
ACCCTGCAGG CCACCCAGCC CGTGCGTCTG CCGCCGATCG GGTCGCCGGA GGTGGGCGAA 
CCGATGTTCC GGCTGGCGCC CGAGATCGCC GCGCCGGTCG ATGTCGACCT GGTGCTCGAT 
TTCGACGTCG ACGCGCCCTT GCCCGAGCCG CCGCAGCTGC CCGCCCACGA AACCGCCGAC 
GAGGTGGTCT GGGCGTCCAC CGCCCCCGCG CCGGAGTCGT TCGAGCCCGT CGCCGAGCCG 
CCGCTGATCG AGCCGATCGA GATCGGCCTG CCGCCGGCCG AGGTGGCGGA CGCCGAGCGG 
CCCGATGCGG GCCCGCCCGA CTTCGACCTG CCCGATACCG AGGCGCCCGA CGCCGCCGCC 
CTCGAAGCCG AGCTCGACGG TCAGGCCGAT GCCGACACCC GCTGGTCGGC CGAGCCGCCG 
TCCCTGCTCG ACGCCGAATT CACCGTCGTG GCGCCGCTCG ATGCGCTGGC CGACGTGCCC 
GATGCGCCGG TCTGGCCGAC CGAAACCGAG GCGCCGCTGC TCACCGAGGT GATCGAGCCG 
CAGCCCCTGT TCGACGCGGT CGACGCCGCC GCGCTGCTGC CGCACGATCT GCCGGTGCTC 
GACGAGGTGG CCACCGTCGC CGATTTCGGC GCGGTGCCGG CCGAGGTCGA TGCCCTCGAG 
ATCCCCGAGG TGGCGGTCGA ACCCGAACTC CCGGTGCTCA GCGACGAACA GGCCGCCGCC 
TATTTCGCTG CGCCCGAGTT CGTGCAGGCG CCGCCGAGCG AGCCGCACGC CGACATCGAC 
CTGTCGGAGA CCGGCCAGCC GGCCGACGAG CCGGCGGTGC TGTCGGTCGA ACCGTTCGAC 
GAGAGGCCCG CCGACGTGCT GGCCGAGTTG CCGCCTGATG CGCCGGACGT GCCGGTCGCG 
CCGGACGACG TTTGGGTCGA GCCGCCCGTT GCGCCGGAGC CTGTCGACGC GCCGCTGGAA 
ATCGTCGATC AGGTCGATGC GGTCGCATCC GACGAGCCTG ATGAGCCGCC CGCGCCGGTC 
CGCACCGGCG CCGCGGTGTT CCGGCTGGAG GATTTCCGCC CCAGCGCGCC GCTGCCGATC 
GCGCCCGACG AGCGCCGTGC CGACGAGCAG ATCAAGGTGG TCGGTCCGCT GCGGCTGCAG 
ATCCCGCTGT TCAACATCTT CCTCAACGAG GCCGACGAGC TGTCGCGCCG GCTCAACAAC 
GAGCTGGCGC TGTGGTCGCT CGAACTCGAT CGCCCGGTCG GCGAGACCGC CGGCGCGCTG 
GCCCACTCGC TGGCCGGGTG CTCGGCCACG GTCGGTTTTG CCGATCTGTC GCAGCTGGCG 
CGCGAGCTCG AGCACGCGCT CGGCCGTGCC CAGTACCTCG GGGCCGGTGA CGAGACCGAT 
GCCGAGCTGT TCATCGGCGT GGCCGACGAG ATCCGCCGTC TGCTGCACCA GTTCGCGGCC 
GGTTTCCTGC AGACACCGGC GCCCGGCCTG CACGAGCGCC TGCAGGCCTG GCAGGAGGCT 
GCCGCGCAGC GCCTGCCGGT GCGTCCGCCC GAGACGTCGA GTGGCGACTC CACCCTCGAC 
GCCTCCGGGG CCGTCAGCGA TTTCGATGCG CTGCCGACGC AGGAACTGAT CGCCGCCGGC 
GAGGCGATCG ACGTGATGAG CCTCGACTTC GAGCTGCCCA CCGACTCGCC CGCCGATCTG 
GTGGTGGAGC TCGGCGAGCG CGAGGCCGGC TTCGATGCCG CGCCCGAACC GGTGTTCGAG 
TCCGGCGACG TGCTCGATCT GACGCTGGAC GAGCCGGTTG CGCAAGTCGC CGCGTCGGAC 
GCCATCGCCA CGGACGGCAT CGACGAGGCG CCTGCGGCTG CCGACGCCCT GGCGCCGGCG 
CTGCCAGCCG ACGAGCCTGT GCTGCAACCG ACCTTGCTCG ACGCCGACAT GACGGTCTGG 
CCGCTGGCGG CCGAGTCGGC CGACATCGAC CTGCAGGCGC TGTCGCAGCC GTCGGACGAG 
CGCGTCTACG GCGCGATGCC GGCCGCGGTC GACCTGCCGC TCGACCTGCC GTGGTCGGTG 
CCCTCGAAGC CGCTGCCGCT GGACGGGCTG CACGAGGAGA TCGACGCCGA CATCGATCAG 
CAGGATCAGG TCGACGCCGA GCTGTTCCCG ATCTTCGACG AGGAGGCGCA GGAGCTGCTG 
CCGCAGCTGG CGGCCCAGGT GGCCGAATGG CAGCGGGCCC CGGCCGACCC GAGTGCGGCG 
ACCGCCTGCA TGCGCACCCT GCACACGTTC AAGGGCAGCG CCCGGCTGGC CGGCGCGATG 
CGGCTGGGCG AGCTGGCGCA CCGCTTCGAG TCGGCGATCG AGCGCCTGAT CGGGCACGGC 
CCGGTCGCGG CGGCCGATCT CGACGACCTG CAGCGCCGCG CCGACGGGCT CAGCGCCGCG 
TTCGATGCCG TGCGCGCCGC CCATGGCGCC GCGCCGGCCA GCATGCTGGG CCTGCTCACG 
CCGCCGTCGG TGTCGGGCGC CTGGGGCACC CGGCCGGTGC CGCTGTCGGA GCACCGCAGC 
GAATTCGCGT CGCTGTCGGG CCTGTCGCCG CTGGACACCG GGCGTGGCAG CGACACCGGC 
TTCAACATCG ACCAGATGGC CGATGGCGGC CCGCCGAGCA CCCGGCCGGC GGTCCTGGCG 
TCGGCGTTCT CGGCCCTGTC GGCCGATGCC GACGGCTCCG ATCCGATCGA CTGGTCGCGC 
TTTCTCGGCG ATGCCGAGCA GCTGCCCCTG CACACGCCCG ACCGCGCGCC GACCAGCGTG 
CAGCCGGTGC GGGTGCGTGC GGCGCTGCTC GACCGGCTGG TCAACCTGGC CGGCGAGGTC 
AGCATCACGC GCTCGCGGCT CGAAGCCGAG GTCGGCTCGA TCCGCGCCTC GATGACCGAC 
CTGACCGAAA ACCTGGAACG CCTGAACCAG CAGCTGCGCG ACGTCACGCT GCAGGCCGAG 
ACCCAGCTCG AGTCGCGCCT GAAGGCGGCG CGTGCGGCCT CGCAGGAGTT CGATCCGCTC 
GAACTCGACC GCTACACCCG GCTGCAGGAA CTGACCCGCA TGATGGCCGA GTCGGTCAAC 
GACGTCGCCA CCGTGCGCAG CACCATGCAG CGCACCGTGC AGGCGGCCGA GGACGAGCTG 
GCGGTGCAGG CGCGCCTGAC CCGCGAGCTG CAGGGCGACC TGCTGCGCAC CCGCATGGTC 
GAGTTCGAGA GCCTGTCCGA GCGGCTCTAC CGCGTGGTGC GCCAGGCCTC CAAGGAGACC 
GGCAAGCAGG TGCGCTTCGA CATCGTCGGC GGTTCGATCG AAGTCGACCG CGGCGTGCTC 
GACCGCATGA CCGCGGCCTT CGAGCACCTG CTGCGCAACT GCGTGACGCA CGGCATCGAG 
GCGCCCGAGC AGCGGGTCGC CGCCGGCAAG GACCCGACCG GCAGCATCGT GGTGTCGCTC 
GAGCAGGAGG GCAACGAGGT CAGCGTCGAG ATCCGCGACG ACGGCGCCGG CCTCGACCTG 
CCGCGCATCC GCGAACGCGC TGTCGCGATG GGCCTGATCA CGTCCGGTGC CGAGCTGTCC 
GAAAACGAGC TCGCCAACCT GATCCTGGCG CCGGGGCTGT CGACCATGGT GGTCGTCACC 
GAGCTGGCCG GGCGCGGTGT CGGCATGGAC GTGGTGCGAT CCGACGTGCA CGCGATGGGC 
GGACGCATCG AGACCCGCAG CCAGACCGGC CGCGGCACCC GCTTCAAGCT GGTGCTGCCG 
CTGACCACGG TGGTCACGCA GGTGGTGATC CTGCGCGCCG GCGCGCGCTC GATCGCGGTG 
CCGTCGAACC TGGTCGAGCT GGTGCAGCGT GCCGCGCCGG GTGCGATCGA CCAGGCCTAC 
CAGCAGGGCC GCTACAGCTA CGGCGGCCTG CAGCTGCCGT TCTTCTGGCT CGGCGCGCTG 
CTCGAGTCGA GCGGGCGCGG GGTCGAGACC GGCCGCACGC TGCCGGTGGT GATCGTGCGC 
TCGGCCCAGC AGCGGGTGGC GCTGCATGTC GACGAGATCC AGGGCAGCCA CGAAGTGGTG 
GTCAAGAACC TCGGGCCGCA GCTCTCGCGC CTGCCGGGCC TGGCGGGCAT GACGCTGCTG 
GCGTCGGGGG CGGTGGCGCT GATCTACAAC CCGGTGGCGC TGGCCAGCGT CTACGGCGAA 
TCGGCCCTGC GGCTGATGCA GCTGGCGTCG GCGATGCCGG CGAATGCGCC GACGCAACCC 
GGCCAGGAGA CCATCCGCCC GGCGCCGCTG GTGCTGGTGG TCGACGATTC GCTGACGGTG 
CGGCGCGTCA CCAAGCGCCT GCTCGAACGC GAGGGCTACC GCGTCGCGCT GGCCAAGGAC 
GGGCTGGAGG CGCTCGATGC GCTGTCGGGC GAGCGGCCGG TGGCCGTGCT GTCGGACATC 
GAGATGCCGC GCATGGACGG CTTCGACCTG CTGCGCAACA TCCGCGGCGA CGCCGAACTG 
GCCTCGCTGC CGGTGATCAT GATCACCTCG CGCATCGCCA AGAAGCACCG CGACATCGCC 
ACCGAACTGG GCGCCAACCA CTACCTCGGC AAGCCCTACA GCGAGGAAGA ACTGCTGGGC 
CTGCTGCGCC AGCACGCCGG CGCGCAGCGC CGCGCGGTTG CCTGA 

 

Protein sequence

MQMDPQHTTA ATPVADDLSA LAWVHEELRK TLEQAHKGLR RYLREVEASA HSDLDDVEPT 
ILRNARQHLH EGVGALQLVN VPEGALLLRA SEAAVQRYVA KPQRMDMKGV EAVERASFAL 
LDYLGRRLSG KPAPAVGLFP QLRVLLELNA AERIHPADLW PHDWRWRAVP ALASVPHAAD 
AALLADVERR MLALVKQNSP EAAAALTRAF GAVALAAAPV SLQEATLWSI AAGFFEAWGR 
GLLVPDLFLK RTASRAMAAM RARVRGDADV SERLAQDLLF FCERAVPAPD APAPHLAAVR 
TAYQLADEPA PDYTEPRFGR HDPSLIQQAR KRVVSAKESW NGVAGTEPQR LANLGETFGL 
VGDSMRKLYA GGGRLADALA AAADVTARQA RPPAPQLAME VATSLLYLEA ALDEGEFDHP 
DQAERAERLA QRIERVTAGA AAEPLEPWME ELYRRVSDRQ TMGSVVQELR ASLSEVERQI 
DQFFRSPSES GLLAAVPDQL ASMRGVFSVL AIAPAMQAVA RMRSDVEQLL HVDADPRSQA 
TLASFQRLAG NLGALGFLID MLSVQPQMTK QLFRFDMLNG VLAPVMGRSA MAPDLVDRAQ 
AIADAVRRNE VPLAQVSAEL ASLSQEATVN DQPALAASLS SAQAALSQAA EAGAGRDTEG 
AAREYVAQAM DDFVATATSP MGLDPIGLPM ISRPMELGPE DTPAFAPTGL EDDHEMRGVF 
LEESAEVLAD AQAALAELNV SPSDLSAMIT TRRAFHTLKG SSRMVGFAAF GEAAWACEQL 
YNHALAEQSP ASADLRTFTG DALAYFAAWI SAIGHGTEAR FTPDPVMAAA DTLRLAGELM 
RVHLPGEEAP SSPPQSDYGP LSDLIDLEVP FGDTGAPVVE TLQATQPVRL PPIGSPEVGE 
PMFRLAPEIA APVDVDLVLD FDVDAPLPEP PQLPAHETAD EVVWASTAPA PESFEPVAEP 
PLIEPIEIGL PPAEVADAER PDAGPPDFDL PDTEAPDAAA LEAELDGQAD ADTRWSAEPP 
SLLDAEFTVV APLDALADVP DAPVWPTETE APLLTEVIEP QPLFDAVDAA ALLPHDLPVL 
DEVATVADFG AVPAEVDALE IPEVAVEPEL PVLSDEQAAA YFAAPEFVQA PPSEPHADID 
LSETGQPADE PAVLSVEPFD ERPADVLAEL PPDAPDVPVA PDDVWVEPPV APEPVDAPLE 
IVDQVDAVAS DEPDEPPAPV RTGAAVFRLE DFRPSAPLPI APDERRADEQ IKVVGPLRLQ 
IPLFNIFLNE ADELSRRLNN ELALWSLELD RPVGETAGAL AHSLAGCSAT VGFADLSQLA 
RELEHALGRA QYLGAGDETD AELFIGVADE IRRLLHQFAA GFLQTPAPGL HERLQAWQEA 
AAQRLPVRPP ETSSGDSTLD ASGAVSDFDA LPTQELIAAG EAIDVMSLDF ELPTDSPADL 
VVELGEREAG FDAAPEPVFE SGDVLDLTLD EPVAQVAASD AIATDGIDEA PAAADALAPA 
LPADEPVLQP TLLDADMTVW PLAAESADID LQALSQPSDE RVYGAMPAAV DLPLDLPWSV 
PSKPLPLDGL HEEIDADIDQ QDQVDAELFP IFDEEAQELL PQLAAQVAEW QRAPADPSAA 
TACMRTLHTF KGSARLAGAM RLGELAHRFE SAIERLIGHG PVAAADLDDL QRRADGLSAA 
FDAVRAAHGA APASMLGLLT PPSVSGAWGT RPVPLSEHRS EFASLSGLSP LDTGRGSDTG 
FNIDQMADGG PPSTRPAVLA SAFSALSADA DGSDPIDWSR FLGDAEQLPL HTPDRAPTSV 
QPVRVRAALL DRLVNLAGEV SITRSRLEAE VGSIRASMTD LTENLERLNQ QLRDVTLQAE 
TQLESRLKAA RAASQEFDPL ELDRYTRLQE LTRMMAESVN DVATVRSTMQ RTVQAAEDEL 
AVQARLTREL QGDLLRTRMV EFESLSERLY RVVRQASKET GKQVRFDIVG GSIEVDRGVL 
DRMTAAFEHL LRNCVTHGIE APEQRVAAGK DPTGSIVVSL EQEGNEVSVE IRDDGAGLDL 
PRIRERAVAM GLITSGAELS ENELANLILA PGLSTMVVVT ELAGRGVGMD VVRSDVHAMG 
GRIETRSQTG RGTRFKLVLP LTTVVTQVVI LRAGARSIAV PSNLVELVQR AAPGAIDQAY 
QQGRYSYGGL QLPFFWLGAL LESSGRGVET GRTLPVVIVR SAQQRVALHV DEIQGSHEVV 
VKNLGPQLSR LPGLAGMTLL ASGAVALIYN PVALASVYGE SALRLMQLAS AMPANAPTQP 
GQETIRPAPL VLVVDDSLTV RRVTKRLLER EGYRVALAKD GLEALDALSG ERPVAVLSDI 
EMPRMDGFDL LRNIRGDAEL ASLPVIMITS RIAKKHRDIA TELGANHYLG KPYSEEELLG 
LLRQHAGAQR RAVA