Gene Lcho_3961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3961 
Symbol 
ID6162386 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4439626 
End bp4440075 
Gene Length450 bp 
Protein Length149 aa 
Translation table11 
GC content71% 
IMG OID641666739 
ProductHolliday junction resolvase-like protein 
Protein accessionYP_001792980 
Protein GI171060631 
COG category[L] Replication, recombination and repair 
COG ID[COG0816] Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 
TIGRFAM ID[TIGR00250] RNAse H-fold protein YqgF 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.000281668 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGCCAT CGCGCGCGCA AGCCGCCGTG GTCAGAGCGC CCCAGACCTT CCTGTCCTTC 
GACTACGGTC GCAAGCGCAC CGGCGTGGCC AGCGGCAACC GGGTGTTCGG CCAGGCCACG 
CCCCTGACCA CCGTCACCGC CGAGGGCGAT GCCCGTTTCG AGCGCATCGC CCGCCTGATC 
GCCGAGTGGC AGCCCGACGC GCTGGTGGTC GGCGTGCCGC GCCACCCCGA CGGCGCGCCG 
CACGAGAACA CCCGCCTCGC ACAACGGTTT GCGCGCCAGC TGCACGGGCG TTTCCGCCTG 
CCGGTGTTCG AGGTCGACGA GCGCTACAGC ACCACCGAGG TGCTGGCCGC CGGCGCACGC 
GATGCCGATG CGGCGGCGGC GGCCTTGCTG CTGGAGCAAT ATTTCAACGA ATCCGACCGT 
GCGGCACTCG CCGCCAAGGA GCAAACATGA
 
Protein sequence
MTPSRAQAAV VRAPQTFLSF DYGRKRTGVA SGNRVFGQAT PLTTVTAEGD ARFERIARLI 
AEWQPDALVV GVPRHPDGAP HENTRLAQRF ARQLHGRFRL PVFEVDERYS TTEVLAAGAR 
DADAAAAALL LEQYFNESDR AALAAKEQT