Gene Lcho_3934 details

Gene Information

• Locus tag: Lcho_3934
• Symbol: rplF
• ID: 6163728
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 4414177
• End bp: 4414710
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 641666712
• Product: 50S ribosomal protein L6
• Protein accession: YP_001792953
• Protein GI: 171060604
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 49
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCCCGCG TAGGAAAGAT GCTGGTCGCC GTCCCGCAAG GTGTGGACGT GTCGATCAAT 
GAAGACCTGA TCAGCGTGAA GGGTTCGCTG GGCACGCTGT TGCGCCCGGC TCATCGCCTG 
GTCAAGGTCC AGAATGAAGC TGGCAAGCTG AGTTTCACGC CGCTCGACGA GTCGGCTGAA 
GCGAATGCGA TGTCGGGAAC CATGCGCGCA CTGGTGGCCA ACATGGTCAA CGGCGTGAGC 
AAGGGCTTCC AGAAGAAGCT GAGCCTGGTC GGCGTGGGTT ATCGTGCCCA GGCCCAAGGC 
CAGAAGCTGA ATCTGCAGAT TGGTTTCTCG CATCCGGTGG TCAAGGAAAT GCCCGAAGGC 
ATCAAGGTCG AGTGCCCCAC TCAGACCGAG ATCCTGATCA AGGGTGCCGA TCGCCAGGTT 
GTGGGTCAAT TGGCCGCTGA GGTCCGTGCC TTCCGCCCAC CCGAGCCCTA CAAGGGCAAG 
GGCATCCGTT ATTCGGATGA GAAGGTCGCG ATCAAAGAGA CCAAGAAGAA GTAA 

 

Protein sequence

MSRVGKMLVA VPQGVDVSIN EDLISVKGSL GTLLRPAHRL VKVQNEAGKL SFTPLDESAE 
ANAMSGTMRA LVANMVNGVS KGFQKKLSLV GVGYRAQAQG QKLNLQIGFS HPVVKEMPEG 
IKVECPTQTE ILIKGADRQV VGQLAAEVRA FRPPEPYKGK GIRYSDEKVA IKETKKK