Gene Lcho_3924 details

Gene Information

• Locus tag: Lcho_3924
• Symbol: rpsD
• ID: 6161662
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 4409165
• End bp: 4409788
• Gene Length: 624 bp
• Protein Length: 207 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 641666702
• Product: 30S ribosomal protein S4
• Protein accession: YP_001792943
• Protein GI: 171060594
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 55
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGCACGTT ACCTCGGACC CAAGGCCAAG CTGGCCCGCC GTGAAGGCAC CGATCTCTAC 
CTGAAGAGCG CACGTCGTTC GATCAGCGAC AAGTCGAAGT TCGAATCCAA GCCTGGCCAG 
CATGGCCGCA CCTCGGGTTC GCGCACTTCC GACTTCGGCC TGCAACTGCG CGAGAAGCAG 
AAGGTCAAGC GCATGTACGG CGTGCTCGAG AAGCAGTTCC GCCGCTACTT CGCCGAAGCC 
GACCGCCGCA AGGGCAACAC CGGTGCCAAC CTGCTGCTGC TGCTCGAGTC GCGGCTGGAC 
AACGTGGTCT ATCGCATGGG CTTCGGTTCG ACCCGTGCAG AAGCGCGTCA GCTGGTCTCG 
CACAAGGCTG TCACCGTCAA TGGCCAGTCG GTCAACATCC CGTCGTACCT GGTCAAGGCC 
GGCGACGTGA TCAGCGTGCG CGAAAAGTCG AAGAAGCAGC TGCGCATCAT CGATGCCCTG 
AAGCTGGCCG ATTCGATCGG CCTGCCGGCC TGGGTTTCGG TCGACCTGAC GAAGATGGAA 
GGCATCTTCA AGAAGGCTCC TGACCGTGAT GAGTTCGGCG CCGAAATCAA CGAATCGCTC 
ATCGTCGAAC TGTATTCGCG TTGA 

 

Protein sequence

MARYLGPKAK LARREGTDLY LKSARRSISD KSKFESKPGQ HGRTSGSRTS DFGLQLREKQ 
KVKRMYGVLE KQFRRYFAEA DRRKGNTGAN LLLLLESRLD NVVYRMGFGS TRAEARQLVS 
HKAVTVNGQS VNIPSYLVKA GDVISVREKS KKQLRIIDAL KLADSIGLPA WVSVDLTKME 
GIFKKAPDRD EFGAEINESL IVELYSR