Gene Lcho_3923 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3923 
Symbol 
ID6161720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4408042 
End bp4409028 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content64% 
IMG OID641666701 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_001792942 
Protein GI171060593 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACCA ATCTGCTGAA ACCCAAAGCC ATCAACGTCG ATCCGCTGGG TGGGCACCGC 
GCCAAGGTGA CCCTCGAGCC GTTCGAGCGT GGCTTCGGGC ACACGCTGGG CAACGCGCTT 
CGCCGCGTGC TGCTGTCGTC GATGGTCGGC TACGCGCCCA CCGAAGTGAC GATCGCCGGC 
GTGCTGCACG AGTACTCCAC CGTCGACGGT GTGCAGGAAG ACGTGGTTCA CATCATGCTC 
AACCTCAAGG GCGTGGTGTT CCGTCTGCAC AACCGCGATG AAGTGACGCT GGTGCTGCGC 
AAGGAAGGCG AAGGCCCGGT GAAGGCTTCC GACATCCAGA CGCCGCATGA CGTCGAGATC 
ATCAATCCTG ACCACGTGAT CGCTCACCTG GCCCAGGGCG GCAAGCTCGA CATGCAGATC 
AAGGTCGAGA AGGGCCGTGG TTACGTGCCG GGCAGCATGC GCCGCTACGC CGACGAGCCG 
ACCAAGTCGA TCGGCCGCAT CGTGCTGGAC GCGTCGTTCT CGCCGCTCAA GCGCGTCAGC 
TACACGGTCG AGAGCGCTCG CGTCGAGCAG CGCACCGACC TCGACAAGCT GGTGATGGAG 
ATCGAGACCA ACGGCGCGAT CTCGCCCGAG GAAGCGATCC GCGCCTCGGC CAAGATCCTG 
GTCGAGCAGC TGGCGGTGTT CGCGCAGCTC GAAGGCAGCG ACCTGGCGAT CTTCGAAGCA 
CCGGCACCGC GTGCCCAGCA CTTCGATCCG ATCCTGCTGC GTCCGGTCGA CGAGCTCGAA 
CTGACGGTGC GTTCGGCCAA CTGCCTGAAG GCCGAGAACA TCTATTACAT CGGCGACCTG 
ATCCAGCGCA CCGAGACCGA GCTGCTCAAG ACCCCGAATC TGGGTCGCAA GTCGCTCAAC 
GAAATCAAGG AAGTGCTGGC TTCGCGTGGT CTGACTCTGG GCGCCCGCCT CGAGAACTGG 
CCGCCGCAAG GCCTCGACAA GCGCTGA
 
Protein sequence
MQTNLLKPKA INVDPLGGHR AKVTLEPFER GFGHTLGNAL RRVLLSSMVG YAPTEVTIAG 
VLHEYSTVDG VQEDVVHIML NLKGVVFRLH NRDEVTLVLR KEGEGPVKAS DIQTPHDVEI 
INPDHVIAHL AQGGKLDMQI KVEKGRGYVP GSMRRYADEP TKSIGRIVLD ASFSPLKRVS 
YTVESARVEQ RTDLDKLVME IETNGAISPE EAIRASAKIL VEQLAVFAQL EGSDLAIFEA 
PAPRAQHFDP ILLRPVDELE LTVRSANCLK AENIYYIGDL IQRTETELLK TPNLGRKSLN 
EIKEVLASRG LTLGARLENW PPQGLDKR