| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3917 |
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| Symbol | |
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| ID | 6161714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4402478 |
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| End bp | 4404610 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666695 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001792936 |
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| Protein GI | 171060587 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAGGAA GTGCTTACGC CCCGGCCGAC CTGCAGCGCC ATACTGAAAA GATGGCAGCA
ACTGAATTGA CGCAGCCGTC GGCCACATTC GGGCTCGAGC GGGGTTGGCT GCGCTGGCGG
CGGGCGGCGC TGTGGGCGCT GCTCGGTGCG CTGCTGCTGG CCGTCGAGGC GAGCCTGCTG
TGGCTGACCT GGCAGCACGA ACGCAACCGG CTGCAGGATG CCACCGAGCA GGCTGCCGTG
GCGGCGGCCG CCGACATCCG GCTGCGCCTG GCCGACAACA CCCAGGCGCT GCAGCAGGTG
CTGTGGGGCG TGCTCGACGA GGCCGGCTTT CGCGGCCGTG CCGACGCGGT GTTGCGCGCG
CACCCCGAGA TCGCCCGCAT CGAATGGCGC GGCGCGGACT TTTCGCTGGT TGCGCGGGCC
CTGTCGCCGC TGCATCCGAA CCTGTTCGGC GTCATCGGCC GCGCGGCGAT GGTGCTCGAT
GCGGAGGCCG CCTGCGTGTC GGCCAGCCGC TTCGAGGCGC CGGTGCTGTC GCGCAGCTAT
TTCGCGCCGA CCCAGGGCGG GCTCGGCGCC GAGGTGGTGG ACCTGTGCGT GCCGCACCTC
GAAGAGGGCC GCCGGCTCGG CTCGCTGGTC GCCACGCTGG TGCTGTCCGA GGTGCTGGAG
CAGGCCGTCG CGCCCGAGAT GCAGCGCCAG CACGAAGTCC TGCTGGTCGA AGCCGACGGC
ACCCGGCTGG CGCGGGCCGG CAGCAGCCGC GGCCGTGGCG CCTACCGGGC CGAGCGGCTG
GTCGATTTCG AGGGTTTCAC CGCGCTGGTG CGGCTCGACA GCGCCGCGCA GCGCCCGCCG
CTGATCCCCA ACATCAGCTC GGCGCTGGTG CTGGGGCTGT CCGTCGCGCT GTGTGCGGCG
GTGCTGGTGC TGGCCTACGA CGTGCGGCGG CGCTCGGCCG CCGAACGTGG CCTGGCCGAA
TCGCTGGCGT TCCGCAAGGC GATGGAGGAT TCGCTCGTCA CCGGCCTGCG CGCGCGCGGC
CTCGACGGCA CCATCACCTA CGTCAACCCG GCGTTCTGCC ACATGGTGGG CTGGAGCGCG
CAAGAGCTGC GCGCGTGCGC CGACCCGCTG CGATCGCCGC CCTACTGGCC GCCGGAGATG
GTCGAGCAAT ACCGCCAGCG CCAGGCCGTG CGCATGGCCG GCAATGCGCC GCCGCGCGAA
GGCTACGAGA CGCTGTTCAT GCGCCGCAAC GGCGAGCGCT TTCCGGTGCT GATCTTCGAG
GCGCCGCTGG TCGACGGACG CGGCCGGCAG ACCGGCTGGA TGAGCGCCGT GCTCGACGTC
AGCGCGCAGC GCAAGATCGA GGAGCTGTCG CGCCAGCAGC AGGAAAAGCT GCAGGCCACC
GCCCGGCTGG CGACGATGGG CGAGATGGCC TCGCTGCTCA GCCACGAGCT GAACCAGCCG
CTGGCGGCAA TCGCCAGCTA CGCCAGCGGC TCGCTCAACC TGCTGCCGCA AAGCGCGAAC
GACGCCCCGG CCGACCTCGA CACGCAGCTG ATGATCCGCC ACGCCATGAC GCGTGCCGCC
GAACAGGCCG ACCGCGCCGG GCGCGTCATC CGCAGCGTGC ACCAGTTCGT GCGCCGGCGC
GAGCGGCTGC GCGAGAACGT GCGTGCCCAC GAGCTGCTCG ACGCCGTGAT GCCGCTGGTG
CGCATGGCGG CGCGGCGCGG CAACGTGCGC ATCGAGGTCG ACGTGGCCAC GCCGTCGCCG
CGGGTGTCGT GCGACCGCAC GATGGTCGAG CAGGTGCTGC TCAACCTGTC GCGCAACGCC
ATCCAGTCGA TGGAAGAGGA CACGCCGCAG GAGGACCGCG TGCTGACCTT GCGGGCGCGC
ACGCTGGACG CGCACTGGAT CGAATTTGCG GTGATCGATC GCGGCCCCGG CATCCCGCCC
GAGGTCGCGC GGCAGCTCTT CACGCCCTTC TTCACGACCA AGGCCGAGGG CATGGGCATC
GGCCTGTCGA TGTGCCGCAC GGTGATCGAG CAGCACGGCG GCGCGCTCGA CTTCCATTCG
CCCGAAGGTG CGCGCGGCAC CTTGTTCAGG TTTACGCTCC CGGCTGCCAG CGTGATGGCG
CCGCCCGCCG TGCTCCCCAC CTCCAGTCCC TGA
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| Protein sequence | MRGSAYAPAD LQRHTEKMAA TELTQPSATF GLERGWLRWR RAALWALLGA LLLAVEASLL
WLTWQHERNR LQDATEQAAV AAAADIRLRL ADNTQALQQV LWGVLDEAGF RGRADAVLRA
HPEIARIEWR GADFSLVARA LSPLHPNLFG VIGRAAMVLD AEAACVSASR FEAPVLSRSY
FAPTQGGLGA EVVDLCVPHL EEGRRLGSLV ATLVLSEVLE QAVAPEMQRQ HEVLLVEADG
TRLARAGSSR GRGAYRAERL VDFEGFTALV RLDSAAQRPP LIPNISSALV LGLSVALCAA
VLVLAYDVRR RSAAERGLAE SLAFRKAMED SLVTGLRARG LDGTITYVNP AFCHMVGWSA
QELRACADPL RSPPYWPPEM VEQYRQRQAV RMAGNAPPRE GYETLFMRRN GERFPVLIFE
APLVDGRGRQ TGWMSAVLDV SAQRKIEELS RQQQEKLQAT ARLATMGEMA SLLSHELNQP
LAAIASYASG SLNLLPQSAN DAPADLDTQL MIRHAMTRAA EQADRAGRVI RSVHQFVRRR
ERLRENVRAH ELLDAVMPLV RMAARRGNVR IEVDVATPSP RVSCDRTMVE QVLLNLSRNA
IQSMEEDTPQ EDRVLTLRAR TLDAHWIEFA VIDRGPGIPP EVARQLFTPF FTTKAEGMGI
GLSMCRTVIE QHGGALDFHS PEGARGTLFR FTLPAASVMA PPAVLPTSSP
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