| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3916 |
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| Symbol | |
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| ID | 6161789 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4399939 |
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| End bp | 4402257 |
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| Gene Length | 2319 bp |
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| Protein Length | 772 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641666694 |
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| Product | malic enzyme |
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| Protein accession | YP_001792935 |
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| Protein GI | 171060586 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0280] Phosphotransacetylase
[COG0281] Malic enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGACTC AAGAAGAAAA GCGCGCCGAG TTGCGCCGCA GCGCCCTCGA ATATCACGAG
TTCCCGACCC CGGGCAAGAT CGCGATCGCG GCCACCAAGC AACTCGTCAA CCAGCGCGAC
CTGGCGCTGG CGTATTCGCC CGGCGTGGCC GCGGCCTGTG AAGAGATCGT CGAGGACCCG
GCCAACGCCT TCCGCTACAC CTCGCGCGGC AACCTGGTCG CGGTGGTCAC CAACGGCACC
GCCGTGCTGG GACTGGGCGA CATCGGCCCG CTGGCGGCCA AGCCGGTGAT GGAGGGCAAG
GGCGTCCTAT TCAAGAAGTT CGCCGGCATC GACGTGTTCG ACCTCGAGAT CCAGCAGCGC
GACCTCGACA AGCTGATCGA CACCATCGCC TCGCTCGAAC CCACTTTCGG TGGTATCAAC
CTCGAAGACA TCAAGGCGCC CGATTGTTTC TACGTCGAGC GCAAGCTGCG CGAGCGCATG
AAGATCCCCG TTTTCCATGA CGACCAGCAC GGCACCGCGA TCGTGGTGGG CGCCGCGCTG
CTCAACGGCC TGAAGGTGCT GGGCAAGGAC ATCAAGCAGG TCAAGCTGGT GTCGTCGGGC
GCGGGTGCGG CGGCGCTGGC CTGCCTGAAC CTGCTGGTCA AGCTGGGCCT GCCGCGCGAG
AACATCACCG TCACCGACCT GGCTGGCGTG GTCTACAAGG GCCGGGTCGA GCTGATGGAC
CCGGACAAGG CCGAGTTCGC GCAGGACACG CCGCATCGCA CGCTGGCCGA GGCGATCGTC
GGCGCCGACA TCTTCCTGGG CCTGTCGGCC GGCGGCGTGC TCAAGCAGCC GATGGTGCGC
AGCATGGCCG AGCGGCCGCT GATCTTCGCG CTGGCCAACC CGACGCCGGA GATCTCGCCC
GAGGAGGTCA AGGCGGTGCG CGACGACGCC ATCATGGCCA CCGGCCGCAC CGACTACCCG
AACCAGGTCA ACAACGTCCT GTGTTTCCCC TACATCTTCC GCGGCGCGCT CGACTGCGGC
GCCACCACCA TCACCGATGC GATGGAAGTG GCCGCCGTCT ACGCCATCGC CGAACTGGCG
CAGGCCGAGC AGAGCGAGGT GGTGGCGGCG GCCTATGCCG GCTCCAACCT GAGCTTCGGC
CCCGAGTACC TGATCCCCAA GCCCTTCGAC CCGCGCCTGA TGATGAAGAT CGCGCCGGCG
GTGGCCAAGG CCGCGGCCGA GTCCGGCGTG GCGCTGCGCC CGATCAAGGA TTTCGACGCC
TACGTCGAGA AGCTGCAGAC CTTCGTCTAC GCCTCGGGCA CGACGATGAA ACCGATCTTC
ACGCTCGCCA AGCGCGCCAC GCACAAGCGC GTCGCCTATG CCGAGGGTGA AGAAGAGCGC
GTGCTGCGCG CGGTGCAGGT GGTGGTCGAC GAGAGCCTGG CGCGCCCGAC GCTGATCGGC
CGGCCGAGCG TGATCGCCCA GCGCATCGAG AAGTTCGGCC TGCGGCTCAA GGAAGGTGTC
GACTACGACG TCGTCAACGT CGAGCAGGAT CACCGCTACC GCGACTTCTG GCAGACCTAC
CACCAGATGA CCGAACGCAA GGGCATCACG GTCCAGGTCG CCAAGATCGA GATGCGCCGC
CGCCTGACGC TGATCGGCGC GATGCTGCTG CACAAGGGCG AGGTCGACGG CATGCTGTGC
GGCACCTGGG GCACCACCGC CACGCACCTG CACTACATCG ACCAGGTCAT CGGCAAGCGC
CACGGCGGCA GCCCGAGCAC ACCGCAGGAC GTGCAGATCT ACGCTTGCAT GAACGGCCTG
ATGCTGCCGA ACCGCCAGGT CTTCCTGGTC GACACCCACG TCAACCACGA CCCGAGCGCC
GAAGAGCTGT GCGAGATCAC GGTGATGGCG GCCGAGGAGA TGATGCGGTT CGGCGTGCAG
CCCAAGGCGG CGCTGCTGAG CCATTCGAAC TTCGGCAGCA GCGACCATCC GAGTGCCGTC
AAGATGCGCC GCACGCTGGC GCTGCTGCGT GAGCAGGCGC CCTGGCTGGA GGTCGACGGC
GAGATGCACG GCGACGTCGC GCTCGACGGT GCGATGCGCC AGACCCTGAT GCCCAACAGC
ACGCTCAAGG GCGACGCCAA CCTGCTGGTG CTGCCCAACA TCGACGCCGC CAACATCAGC
TACAACCTGC TGAAGACCGC CGCCGGCGGC GGCATCGCGA TCGGGCCGGT CCTGTTGGGT
GCCGCCAAGC CGGTGCATGT GCTGACGCCG TCGGCCACCG TGCGCCGGAT CGTCAACATG
ACCGCCTTGA CCGTCGCCGA CGCCAGCGCG ACGCGCTGA
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| Protein sequence | MSTQEEKRAE LRRSALEYHE FPTPGKIAIA ATKQLVNQRD LALAYSPGVA AACEEIVEDP
ANAFRYTSRG NLVAVVTNGT AVLGLGDIGP LAAKPVMEGK GVLFKKFAGI DVFDLEIQQR
DLDKLIDTIA SLEPTFGGIN LEDIKAPDCF YVERKLRERM KIPVFHDDQH GTAIVVGAAL
LNGLKVLGKD IKQVKLVSSG AGAAALACLN LLVKLGLPRE NITVTDLAGV VYKGRVELMD
PDKAEFAQDT PHRTLAEAIV GADIFLGLSA GGVLKQPMVR SMAERPLIFA LANPTPEISP
EEVKAVRDDA IMATGRTDYP NQVNNVLCFP YIFRGALDCG ATTITDAMEV AAVYAIAELA
QAEQSEVVAA AYAGSNLSFG PEYLIPKPFD PRLMMKIAPA VAKAAAESGV ALRPIKDFDA
YVEKLQTFVY ASGTTMKPIF TLAKRATHKR VAYAEGEEER VLRAVQVVVD ESLARPTLIG
RPSVIAQRIE KFGLRLKEGV DYDVVNVEQD HRYRDFWQTY HQMTERKGIT VQVAKIEMRR
RLTLIGAMLL HKGEVDGMLC GTWGTTATHL HYIDQVIGKR HGGSPSTPQD VQIYACMNGL
MLPNRQVFLV DTHVNHDPSA EELCEITVMA AEEMMRFGVQ PKAALLSHSN FGSSDHPSAV
KMRRTLALLR EQAPWLEVDG EMHGDVALDG AMRQTLMPNS TLKGDANLLV LPNIDAANIS
YNLLKTAAGG GIAIGPVLLG AAKPVHVLTP SATVRRIVNM TALTVADASA TR
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