| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3899 |
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| Symbol | |
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| ID | 6161930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4380108 |
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| End bp | 4380794 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641666677 |
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| Product | ribulose-phosphate 3-epimerase |
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| Protein accession | YP_001792918 |
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| Protein GI | 171060569 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
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| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.312657 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCACGCC CCACCTACCG CATCGCCCCC AGCATCCTCT CGGCCGACTT CGCCCGCCTC
GGCGAAGAAG TGCGCAACGT GCTCGCCGCC GGCGCCGACT GGATCCACTT CGACGTGATG
GACAACCATT ACGTGCCCAA CCTGACCTTC GGGCCGATGG TCTGCCAGGC GCTCAAGAAA
CACAGCGTCA AGCCCGACGG CATCGCCTGC CCGATCGACG TGCACCTGAT GGTGCAGCCG
GTCGACGAGC TGGCGCTGGC GTTCGCCAAG GCCGGCGCCG ACCTGGTGAG CTTCCACCCC
GAGGCCAGCG CGCACGTCGA CCGCACGCTG CAGCTGATCA AGGGCGCGGG CTGCCAGGCC
GGGCTGGTGT TCAACCCGGC GTCCAGCCTC GACGTGCTCG AGTACGTGAT CGACCGCGTC
GACCTGATCC TGATCATGAG CGTCAACCCG GGCTTCGGCG GCCAGAGCTT CATCGACAGC
GCGCTGCGCA AGATCGAGCG CGCCCGCCGG CTGATCGAGG CCACCGGCCG CGACATCCGC
CTGGAGGTCG ACGGTGGCGT CAAGGTCGAC AACATCCGCC GCATCGCCGA CGCCGGCGCC
GACACCTTCG TGGCCGGCAG CGCGATCTTC AACACGCCCG ACTACAAGAG CGTGATCGAC
GCGATGCGCG TCGAACTGGC GCGCTGA
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| Protein sequence | MSRPTYRIAP SILSADFARL GEEVRNVLAA GADWIHFDVM DNHYVPNLTF GPMVCQALKK
HSVKPDGIAC PIDVHLMVQP VDELALAFAK AGADLVSFHP EASAHVDRTL QLIKGAGCQA
GLVFNPASSL DVLEYVIDRV DLILIMSVNP GFGGQSFIDS ALRKIERARR LIEATGRDIR
LEVDGGVKVD NIRRIADAGA DTFVAGSAIF NTPDYKSVID AMRVELAR
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