| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3898 |
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| Symbol | |
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| ID | 6161929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4379431 |
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| End bp | 4380096 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666676 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | YP_001792917 |
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| Protein GI | 171060568 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.67393 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAGCTGT TCGGCCGCGA GTTCGACGCG GCGATCGTCG ACCTCGACGG CACGATGGTC
GACACGCAGG GCGACTTCGT CGTCGCGCTC GGCCTGTGCC TGACCGAACT CGGCCTGCCG
GTGGTCGATG CCGCTTTCGT CGAGCTCACC GTCGGCAAGG GCAGCGAGCA CCTGATCCGC
AGCACGCTGG CGCATGTCGG CGGCGATCCG GCGCTCTACG ACGCGGCCTG GGCGGCCTAC
CAGCGCCACT ACCTAGCGAT CAACGGCCGG CACTCGCGCG TCTACGACGG CGTGATCGAC
GGCCTGACGC AGCTGCGCGG CGCCGGCCTG CGGCTCGCCT GCCTGACCAA CAAGCCGGGC
GACTTCGCAC GCCCGCTGCT GGCGGCCAAG GGCATCGACG GTTTCTTCGA CTGCGTGTTC
GGCGGCGACG CCTTCGCGCG CAAGAAACCC GATCCGCTGC CGCTGATCGA GACCTGCAAG
GCGCTCGGCA CGCAGCCCGC GCGCACGCTG ATGATCGGCG ACTCCAGCAA CGACGCGATG
GCCGCGCGTG CCGCCGGCTG CCCGGTGGTG CTGGTCAGCT ACGGCTACAA CCACGGCGAG
CCGATCCGCG CGGTGCCGGC CGAGACCCAC CTCGACACGC TCTCCGACCT GCTGCGCGCA
GCCTGA
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| Protein sequence | MQLFGREFDA AIVDLDGTMV DTQGDFVVAL GLCLTELGLP VVDAAFVELT VGKGSEHLIR
STLAHVGGDP ALYDAAWAAY QRHYLAINGR HSRVYDGVID GLTQLRGAGL RLACLTNKPG
DFARPLLAAK GIDGFFDCVF GGDAFARKKP DPLPLIETCK ALGTQPARTL MIGDSSNDAM
AARAAGCPVV LVSYGYNHGE PIRAVPAETH LDTLSDLLRA A
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