| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3896 |
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| Symbol | |
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| ID | 6162055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4376123 |
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| End bp | 4377610 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666674 |
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| Product | 4-alpha-glucanotransferase |
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| Protein accession | YP_001792915 |
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| Protein GI | 171060566 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1640] 4-alpha-glucanotransferase |
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| TIGRFAM ID | [TIGR00217] 4-alpha-glucanotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.979798 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCTGC CCCGAGCCAG CGGCGTCCTG CTGCATCCCA CGTCCTTGCC GGGGCCGCAC
GGCTCTGGCG ACTTCGGGCC GTCGGCCTAT CACTTCGTCG ACTGGCTGGC AGTGGCCGGG
CAGAAGCTCT GGCAGTTCCT GCCGCTGGGC GGGCTCGGGC CGGGCAACTC GCCGTACATG
AGCACCTCGG CGTTCGCCGG CAACGTGCTG CTGATCGACC TGACCGAGCT GCGCCAGCAC
GGCTGGCTCG ACGACGCCGA CCTGCAACCG GCCGACGGCC TGTGGGCGCA CGCGGTGAAC
TTCCCCGCCG TGGCGCCGTT CCGCATGGAG CGGCTGGCGC GCGCGGCGCG GCGTTTCGAC
GCGCAGGGCA GCGAATCCGA CTGGGCCGGC TTCAGCCGCT TCTGCGCCGA ACATGCCTCG
TGGCTCGACG ACTACGCGCT GTTCATGACC CTCGACGAGC TGCATCACGG CGCCTTCTGG
TGCGACTGGC CGCAGCCGCT CGCCAGGCGC GAGCCGGCGG CGCTGGCGCA GATCGCCGCG
CAGCACGCCG AGCGCATCCA GTTCTGGAAG TTCTGCCAGT GGTGCTTCTT CCGCCAGTGG
GCGCACCTGC GCACCTACGC GCACGAACGC GGCGTGCAGA TGGTCGGCGA CATCCCGATC
TTCATCGCCC AGCAGAGCGC CGACGTGTGG GCGCGGCCCG AGCTGTTCGA GCTCGATGAC
CACGGCCGGC TGCTCGCGGT GGCCGGTGCG CCGCCCGATT CGTTCAGCGC CACCGGCCAG
CACTGGGGCA ACCCGCTGTA CCGCTGGCAG GCCCATGCGG ACGAGGGTTA CGCGTGGTGG
ACCGAGCGCA TCCGCCGCAC CTTCGAGCTG GTCGACATCG TGCGCATCGA CCACTTCCGC
GGCTTCGTGG CGTACTGGTC GATCCCGGCC ACCGACACCC ATGCGATGAA CGGCCACTGG
GAGCCGGGGC CGGGCGCGGC GCTGTTCGAG GCGGTGACCG CGGCGCTGGG CGAGCTGCGC
ATCATTGCCG AGGACCTGGG CGTCATCACG CCCGAGGTCG ACGCGCTGCG CCGTGACTTC
GCCTTGCCCG GCATGCGCAT CCTGCAGTTC GCCTTCGGCG AGGGCAACGC GCACGCCTAC
CTGCCGCACA ACCACGAGCA CGACACCGCC GTCTACACCG GCACGCACGA CAACGACACC
ACGCCCGGCT GGTGGCACAC GCTGCCCGAA CACGTGCGCC ACCACGTGCG CGAATACCTC
GCCATCGACG GCCGCGACAT CCACTGGGAC CTGATCCGCG CCGCCTGCGC CAGCGTCGCC
GACACGGTGA TCGTGCCGAT GCAGGACGTG CTGGGCCTGC CCACCGAACA CCGCATGAAC
TACCCCGGCA AGGCCGAGGG CAACTGGTCG TGGCGCTTTG GCTGGGGTGA TGTCGGGCCG
CTGCCCGCGC AGCGGCTGCG CGCGCTGTGC ACGCTGTACC GGCGCTGA
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| Protein sequence | MRLPRASGVL LHPTSLPGPH GSGDFGPSAY HFVDWLAVAG QKLWQFLPLG GLGPGNSPYM
STSAFAGNVL LIDLTELRQH GWLDDADLQP ADGLWAHAVN FPAVAPFRME RLARAARRFD
AQGSESDWAG FSRFCAEHAS WLDDYALFMT LDELHHGAFW CDWPQPLARR EPAALAQIAA
QHAERIQFWK FCQWCFFRQW AHLRTYAHER GVQMVGDIPI FIAQQSADVW ARPELFELDD
HGRLLAVAGA PPDSFSATGQ HWGNPLYRWQ AHADEGYAWW TERIRRTFEL VDIVRIDHFR
GFVAYWSIPA TDTHAMNGHW EPGPGAALFE AVTAALGELR IIAEDLGVIT PEVDALRRDF
ALPGMRILQF AFGEGNAHAY LPHNHEHDTA VYTGTHDNDT TPGWWHTLPE HVRHHVREYL
AIDGRDIHWD LIRAACASVA DTVIVPMQDV LGLPTEHRMN YPGKAEGNWS WRFGWGDVGP
LPAQRLRALC TLYRR
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