| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3892 |
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| Symbol | |
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| ID | 6162051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4365500 |
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| End bp | 4367482 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666670 |
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| Product | YVTN beta-propeller repeat-containing protein |
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| Protein accession | YP_001792911 |
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| Protein GI | 171060562 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3391] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTCC GTCTTGATTC GATGCTGGCG GCCCTGCTGC TCGGCGCGGC GATGTCCGTC
AGCGGACCCG CCCGATCGGC CGAGGCGGCC GCACCGCAGG GGCCGGTGAC GGATCGCCTG
GTGCGCGGCG GCCTGGTGGT CGACTTCAGC CTGAAACCCG CTGGCGCGCT CGAGGCCGTC
ACCGAAGGCG AGTTCGCCGA CGTGCGTTTT CGCCTCACCG ACGAGGCCGG CGGCCAGCCG
ATCCGCGGTG TCGCGCCGGG GGCGTGGATG GACATGGCGC AGGTCATCCA GGGCCGCGGC
GCCGAGCAGA AGAGCTGCAA GGACAAGGTC TCGCTCTACC TCAAGGGCGC CATCGGCATC
CGGCCGATGG TCGACCTCAA CAGCTACCAC GTCGTGCTGC TCAACAACGA CGCCTCGGTG
GCGGTGGTCG ACCCGATCGT CAGCATGGCC GGCGCCACCA GCACGCTGGC GAGCGTGCTG
CTCAAGTCGC CGGGCGCCGA CTGGGTGGCG TCCGACCGCG AGCGCCGGCT CTACATCTCG
ATGCCGCAGG CCGGCCAGGT GGCGGTGATG GACACCGAGA CCTTCAAGAT CGTCGACAAC
ATCGGCGCCG GCAAGACGCC GGTGCGGGTG GCGCTGCAGC CCGACGGGCG CTTTCTCTGG
GTCGGCAACA ACGCTGACGG CGCCGACAGC GGCGTCAGCG TGATCGACAC CGAGGCCGGC
AAGCCGGTCG CCTTCGTCGC CACCGGCGCC GGCCACCACG AGATCGCGTT TTCGGCCGAC
AGCCGGCACG CCTTCGTCAC CAACCGCCAG GCCGGCACGG CGAGCGTGAT CGACGTCGCC
AGCCGCGCGA TCGTCAAGAC GCTGGCCACC GGCACGCAGC CCTTGTCGAT CGCCCATTCG
CCGCTGTCGG GCTCGGCCTA CGTGGCCGAC GGCAAGGACG GCCGCGTCAC GGTGATCGAC
GGCCGCACGC TCGAGATCGC GGCGCGCATC GCCCTCCAGC CCGGCCTCGG CCCGCTGCGC
ATCACGCCGG ACGGCCGCTA CGCGCTGGCC GTCAACCCGC AGCAAGATCA GGTGCACGTG
ATCGACGTGG CCAGCAACCA GCACGTGCAG GACATCGACA TCGCCGGCCA GCCCTTCCAG
GTCACCTTCA GCAAGACCTT CGCCTACGTG CGCGCGATGC ACTCGTCGCG CGTCAGCATG
ATCAACCTGT CGACGCTCGG CCAGGGCCGC CAGGCGACGG TGCAGGCCTT CGCCGCCGGC
GACCAGCCGC CGCGTGCGGG CGCCGGCGTG GCGATCGCCG ACAGCGTGGC GGCCGCGGCC
GGCGAGGGCA CGGTGTTCGT CGTCAACCCG GCCGACGGCA CCACCTACTA CTACATGGAG
GGCATGAACG CGACGTCGAG CAACTACCGC GTGCACGGCT CCAGCCCGCG GGCGGTGACG
GTGGTCGACC GCAGCCTGAA GGAGGTCGAG CCGGGCGTTT ATGCCGGGCG CGTGCGCATC
CCGGTGGCGG GGCAGTACGA CGTCGCCTTC ATGCTGCAGT CGCCGCAGGT GCTGCACTGC
TTCAGCGCCG AGGCGGCGGT CAACCCGCAG CTGGCGCGTG CCGCCGAGCC GATGCAGATC
GCCTTCGAGA CCACGCAGCG GCAGTTCGCG GTCGGCGAGA CGGCGGCGAT CCGTTTTCGT
GTCACCGATG GCGCCACCGG CACGCCCAGG GCCGGCGTGG CCGGGCTGGC GGCGCTGCAC
TTCCTGGCAC CGGGTCGGCG GCGCAGCGAG TCGGCGGTGG TCGAGATCGG CGGCGGGCTC
TACGAGGCCC GGCTGGCGCT GGCCGAGGCC GGCGCCTGGT ACGTCTACCT CGGTGCGCCG
GCGCTGAAGG TCGGCTACGG CCAGCTGCCG TTCTATTCGC TGCAGGCGCT ACCGCGCGCC
GAACTCGACA AGTCCGCGCC GCAAGCGCCG ATCGCCGCGC AACCGCAACG CGTGCCGTCA
TGA
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| Protein sequence | MTVRLDSMLA ALLLGAAMSV SGPARSAEAA APQGPVTDRL VRGGLVVDFS LKPAGALEAV
TEGEFADVRF RLTDEAGGQP IRGVAPGAWM DMAQVIQGRG AEQKSCKDKV SLYLKGAIGI
RPMVDLNSYH VVLLNNDASV AVVDPIVSMA GATSTLASVL LKSPGADWVA SDRERRLYIS
MPQAGQVAVM DTETFKIVDN IGAGKTPVRV ALQPDGRFLW VGNNADGADS GVSVIDTEAG
KPVAFVATGA GHHEIAFSAD SRHAFVTNRQ AGTASVIDVA SRAIVKTLAT GTQPLSIAHS
PLSGSAYVAD GKDGRVTVID GRTLEIAARI ALQPGLGPLR ITPDGRYALA VNPQQDQVHV
IDVASNQHVQ DIDIAGQPFQ VTFSKTFAYV RAMHSSRVSM INLSTLGQGR QATVQAFAAG
DQPPRAGAGV AIADSVAAAA GEGTVFVVNP ADGTTYYYME GMNATSSNYR VHGSSPRAVT
VVDRSLKEVE PGVYAGRVRI PVAGQYDVAF MLQSPQVLHC FSAEAAVNPQ LARAAEPMQI
AFETTQRQFA VGETAAIRFR VTDGATGTPR AGVAGLAALH FLAPGRRRSE SAVVEIGGGL
YEARLALAEA GAWYVYLGAP ALKVGYGQLP FYSLQALPRA ELDKSAPQAP IAAQPQRVPS
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