| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3889 |
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| Symbol | |
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| ID | 6162339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4362478 |
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| End bp | 4364103 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641666667 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001792908 |
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| Protein GI | 171060559 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGCCG CGATGCGGAT GGGCGCGGCA CTGATGGTGG CACTGATGGC GGCCGCGCTC
GGGTTCGGCC CCGCCGCTGC CGCCGATCTC GGCCCCGACG AGCTGGCCGG CCGGCGCATC
TACCTGCACG GCCAGAGCCC GAGCGGCGCC AGCCTGTCGG CGCGCATCGG CATGGGCGGG
CTCGAACTGA GCGGCGCCAG CATCGCCTGC GGCAACTGCC ACGGCGACGA TGGCCGCGGC
CGCGCCGAAG GCGGCGTGGT GCCGTCTGAC ATCCGCTGGT CGGAACTGGT CAAACCCTAC
GGCCACCAGC ACGACAGCGG CCGCCGCCAC GGCCCGTTCG ACGAGGCGGC GCTGCGCCGC
GCGGTGCTCG ACGGCGTCGA TCCCGACGGC AACCGGCTCG ACGGCGCGAT GCCGCGTTAC
GCGATGTCGG CCAAGGACCT GGCCTCGCTG GCCGCCTACC TGCGCCAGCT GGAGACGCAG
CTCGACCCCG GCCTGTCGGC CGACACGATC CGCATCGGCA CGCTGCTGCC GTTGAGCGGG
CGCATGGCGG GGCTGGGCGA GTCGCTGCGG GCGCTCTGGA CGGCGTATTT CGCCCGGCTG
AACCAGCAGG GCGGCATCCA CGGGCGGCGT CTCGAACTGG TGGTCGAGCC GTTGCCCGAG
GACCCGGCGC AGGCCGGCGC GCAGGTGCGT GCGCTGGTCG CCGAGCGCGC TGTCTTCGCG
CTGCTGGCGC CGGTGTCGGC CGGTGTCGAG CAGGTGCTGT CGGCTGCGGC CAGTGCGGCC
GCCGTGCCGG TGATCGGCCC GCTGACGCTC TACCCGGAGG ATGCACAGGC CTCGAACCCG
CAGGTCTTCC ACCTGCTGCC GGGCGTGCCC GAGCTGGCGC AACTGCTGCT GCAGCACGCC
GCGCGCGAGC TGCAGCTCGC GCAGCGGCCG ATCGCGCTGT GGCATCCCGA CACGGCGCAG
GGCCGCGCGA CGGCGCAGTC GCTCGAGGTG GCGGCGCGCC GGGCCGGCTG GGTCAAGGTG
GTGTCGGGGC CTTTTCCGGC ACGGGGTGCT GCAAGGGATG CCGCGCACGA TGCCGTCGCC
ACCACGCTCA GGAGCCGCGG CGTGGCCGCC GTGCTGGTGC TGGGTGCCGG CGCCGATCTG
GCGTCGCTCA CGGCTGCCGC CGAGCGCATC GGCTGGGCGC CGCAACTGCT GGTGCCGGGG
CCGCTGGCCT CGCGTGACAT CCTGGGCCTG CCGGCCTCGT TTCGCGACCA CGTGACGCTG
GCCTACCCGA GTGCGCCGGC GCAGCAGCAG GCCGGGGCGA TGCGCGAGTT CATGCGCCTG
CTGGAAGCTG CACCGGCGCT GCCGGGCGGG CCGGGCCGCA GCGATGCGCG CGCCTACCAG
CCCACGCTGG TGTCGGCCTA CGCCGCCGGG CTGCTGCTGG TCGAGGGCCT CAAGCGCAGC
GGCCGCGAGC TGTCGCGCCG CAAGCTGCTG GCCACGCTGG AGAGCGTGCA GAGCTTCGAC
ACCGGCCTGC TGCCGCCGCT GAGCTTCAAC GCCGACCGCC GCATCGGCGC GGCCGGCGGT
TATCTGGTCG GTGTCGACCT CGATGCCCAC AGCCTGCGGC CGCTGGGCGG CTATCGCCTG
CCATGA
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| Protein sequence | MHAAMRMGAA LMVALMAAAL GFGPAAAADL GPDELAGRRI YLHGQSPSGA SLSARIGMGG
LELSGASIAC GNCHGDDGRG RAEGGVVPSD IRWSELVKPY GHQHDSGRRH GPFDEAALRR
AVLDGVDPDG NRLDGAMPRY AMSAKDLASL AAYLRQLETQ LDPGLSADTI RIGTLLPLSG
RMAGLGESLR ALWTAYFARL NQQGGIHGRR LELVVEPLPE DPAQAGAQVR ALVAERAVFA
LLAPVSAGVE QVLSAAASAA AVPVIGPLTL YPEDAQASNP QVFHLLPGVP ELAQLLLQHA
ARELQLAQRP IALWHPDTAQ GRATAQSLEV AARRAGWVKV VSGPFPARGA ARDAAHDAVA
TTLRSRGVAA VLVLGAGADL ASLTAAAERI GWAPQLLVPG PLASRDILGL PASFRDHVTL
AYPSAPAQQQ AGAMREFMRL LEAAPALPGG PGRSDARAYQ PTLVSAYAAG LLLVEGLKRS
GRELSRRKLL ATLESVQSFD TGLLPPLSFN ADRRIGAAGG YLVGVDLDAH SLRPLGGYRL
P
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