Gene Lcho_3886 details

Gene Information

• Locus tag: Lcho_3886
• ID: 6162336
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4360281
• End bp: 4360649
• Gene Length: 369 bp
• Protein Length: 122 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641666664
• Product: type II secretion system protein G
• Protein accession: YP_001792905
• Protein GI: 171060556
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR01710] general secretion pathway protein G; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 54
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGGCGCG GTTTCACCCT GCTCGAACTG CTGGTGGTGA TGGCCATCAT CGCCACGCTG 
CTGTCGCTGG CGGTGCCGCG CTATTTCGGC AGCGTCCAGC GCGCCGAGGA GGCCACGCTG 
CGGCAGAACC TGTCGCTGAT GCGCAGCGCC ATCGACCAGC ATTACGCCGA TCACGGCCGC 
TACCCCGAAT CGCTCGACGC GCTGGTCACG CAGCACTACC TGCGCAGCGT GCCGCTCGAC 
CCGGCCACCG GCGCCACAGA CACCTGGATC GTCACCGCGC CCGCCCCGCC GGAGCTGGGG 
CAGGTCTACG ACGTCAGCAG CGGCGCCGAG ACCACCGCGC TCGACGGCAC GGCGTTCAGC 
ACATGGTGA 

 

Protein sequence

MRRGFTLLEL LVVMAIIATL LSLAVPRYFG SVQRAEEATL RQNLSLMRSA IDQHYADHGR 
YPESLDALVT QHYLRSVPLD PATGATDTWI VTAPAPPELG QVYDVSSGAE TTALDGTAFS 
TW