Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3885 |
Symbol | |
ID | 6162335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4359790 |
End bp | 4360275 |
Gene Length | 486 bp |
Protein Length | 161 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641666663 |
Product | hypothetical protein |
Protein accession | YP_001792904 |
Protein GI | 171060555 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACACC GCCGCCACGC CCCGCACGGC TTCACGCTGA TCGAGCTGCT GGTGACGGCC ACGATCGTCG CGGTGCTCGC GTCGGTGGCG CTGCCGCTGG CCGAGCTGAG CGTCAAGCGC GGCCGCGAGA ACGAGTTGCG CGCCGCTTTG CGCGAGATCC GCGGCGCCAT CGACGCCTAC AAGCAGGCCA GCGACGACGG CCGCATCCTC AAGAAGGCCG ACGAGAGCGG CTATCCACCC AACCTCGAAA TCCTGGTCGA GGGCGTCGAA GACGCGCGCA GCCCGAAGAA GACCCGCATC CACTTCCTGC GCCGCCTGCC GCGCGACCCG CTGCATGCCG ATGCGCAGAC GCCGGCCGCG ATGACCTGGG GCCTGCGCAG CTACGACAGC CCGCACGACG CGCCGCGCGA AGGCCGCGAC GTCTACGACG TGCACACGCT GTCGAGCGGC AGCGCCATCA ACGGCCTGCC GTACAACCAG TGGTGA
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Protein sequence | MKHRRHAPHG FTLIELLVTA TIVAVLASVA LPLAELSVKR GRENELRAAL REIRGAIDAY KQASDDGRIL KKADESGYPP NLEILVEGVE DARSPKKTRI HFLRRLPRDP LHADAQTPAA MTWGLRSYDS PHDAPREGRD VYDVHTLSSG SAINGLPYNQ W
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