| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3880 |
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| Symbol | |
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| ID | 6163450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4353319 |
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| End bp | 4355022 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666658 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001792899 |
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| Protein GI | 171060550 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTGA TCGATGCGCC CAACGCCTTT CGAGCCGAGC CGCTGGCGAC CGACCTGATC
GCGGCGGCGC GTGCGCAGGC CCGCGACACC GGCGCGCGGC TGCTCGACAC GCTCGAGGCC
GCCGCCGCCC AGCCCCCCGC CGACTTCATC CGCGCCCTGG CCGCGAGCAC GCGCCTGGGC
GCCTTCGGCA TGCACGACCT GCACCGCCTG CAGGCCGCCT TCGACGTGCT GCCGTTCGCC
GAAGCGGCGC AGCGCGAATG CCTCGTGCTG CGCGAGGCCG GCGGCGAGCT GTTCGTCGTC
ATCGGCGACC CCTTCGATGC CGGCCTGCGC GCCTGGGCCG AAGAGCGCAT CACGTCGCCC
TTCGACTGGC GGCTCGCCCA CCGCGCCGAC ATCCGCGCCT ACCTGTCGCG CCACGAGGAA
TCGCTGCGCG CGATGGACTC GGTGCTCGGC GCCGGCCTGG CCGGCGGCGA CCGACACGAC
GAGGCGATCG AATCGCTCTC GATCACCTCG ATCAGCGAGG ACGGCAGCCC CGTCGTCAAG
CTCGTCAGCT CGACGCTCTA CGACGCGCTC AAGTCGATGG CCAGCGACAT CCACATCGAG
ACCACGCCCG CCGGCCTGAC GATCCGCTAC CGCATCGACG GCGTGCTGGT GCCGGTGGGC
AACGTGCCGG GCCTCGAACT GGCCGAGCAG GTGATCTCGC GCATCAAGGT GATGGCCGAG
CTCGACATCT CCGAGCGCCG CGTGCCGCAG GACGGCCGCT TCAAGGTCTC GATCCAGGGC
CGCGCGATCG ACCTGCGGGT GTCGGTGATG CCCAGCATCT TCGGCGAGGA CGCGGTGCTG
CGCATCCTCG ACAAGCAGGC GCTGACCGCG CAGACGCTCG GCCTGACGCT GGCCAGCCTG
GGCTTCGACG ACGACAGCAT GGCGCGCATG CGCCGCCTTG CCCGCGAGCC CTACGGCATG
CTGCTCGTCA CCGGCCCGAC CGGCAGCGGC AAGACCACCA CGCTGTACGC CGTGCTGAGC
GAGATCAACA GCGGCCAGGA CAAGATCGTC ACCATCGAGG ATCCGGTCGA ATACCAGCTG
CCCGGCGTGC TGCAGATCCC CGTCAACGAG AAGAAGGGCC TGACGTTCTC GCGTGGGCTG
CGCTCGATCC TGCGCCACGA CCCCGACCGC ATCCTGGTGG GCGAGATCCG CGACCCCGAA
ACCGCCGAGA TCGCCGTGCA GGCCGCGCTC ACCGGCCACC TGGTCTTCAC CACCGTGCAC
GCCAACAACG TGTTCGACGT CATCGGCCGC TTCAGGCACA TGGGCGTCGA GCCCTTCACC
TTCGTCACCG CGATGAACGG CATCGTCGCG CAGCGCCTGA TCCGCAAGGT CTGCGACGAA
TGCGCCGTGC GGCGTGTGCC CGGCGCGGCG CTGCTGGCCG AATCGGGCCT GACGCGCGAG
CAGGTGAACG GCTGGCGCTT GCGCGTCGGC CGCGGCTGCG GGCGCTGTCG CGGCACCGGC
TACCGCGGCC GGCGTGCCAT CGCCGAGATC CTGCTGCTCA ACGACGAGCT GCGCGAGCTG
ATCCTGGCCG GCGCACCGGC GCGGCTGCTG CGCGAGGCGG CGGCGCGCAA CGGCACGCGC
TTCCTGCGCG AGGCCGCGCT CGATTGCGTG CGGCGCGGCG AGTCGACGCT GCAGGAGATC
AACCGTGTCA CGCTGGTCGG CTGA
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| Protein sequence | MKLIDAPNAF RAEPLATDLI AAARAQARDT GARLLDTLEA AAAQPPADFI RALAASTRLG
AFGMHDLHRL QAAFDVLPFA EAAQRECLVL REAGGELFVV IGDPFDAGLR AWAEERITSP
FDWRLAHRAD IRAYLSRHEE SLRAMDSVLG AGLAGGDRHD EAIESLSITS ISEDGSPVVK
LVSSTLYDAL KSMASDIHIE TTPAGLTIRY RIDGVLVPVG NVPGLELAEQ VISRIKVMAE
LDISERRVPQ DGRFKVSIQG RAIDLRVSVM PSIFGEDAVL RILDKQALTA QTLGLTLASL
GFDDDSMARM RRLAREPYGM LLVTGPTGSG KTTTLYAVLS EINSGQDKIV TIEDPVEYQL
PGVLQIPVNE KKGLTFSRGL RSILRHDPDR ILVGEIRDPE TAEIAVQAAL TGHLVFTTVH
ANNVFDVIGR FRHMGVEPFT FVTAMNGIVA QRLIRKVCDE CAVRRVPGAA LLAESGLTRE
QVNGWRLRVG RGCGRCRGTG YRGRRAIAEI LLLNDELREL ILAGAPARLL REAAARNGTR
FLREAALDCV RRGESTLQEI NRVTLVG
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