| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3877 |
|---|
| Symbol | trpD |
|---|
| ID | 6163447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4350024 |
|---|
| End bp | 4351061 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641666655 |
|---|
| Product | anthranilate phosphoribosyltransferase |
|---|
| Protein accession | YP_001792896 |
|---|
| Protein GI | 171060547 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0547] Anthranilate phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01245] anthranilate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCG CCAACATCGA CGCGCTGACC CGCGTCATCG ACCACCGCGA GATATTCCAC
GACGAGATGC TGGCGCTGAT GCGCCGCATC ATGAGCGGCG AGATGTCGCC GGTGATGATC
GCGGCCTTCG CCATCGGCCT GCGCGTCAAG AAGGAAACCA TCGGCGAGAT CGCCGCGGCC
GCGCAGGTGA TGCGCGAGTT CGCCACGCCG GTGGCGGTGC CCGACAAGAC GAACCTGGTC
GACCTGTGCG GCACCGGCGG CGACGGCGTG CACACCTTCA ACATCTCGAC CGCGTCGATG
TTCGTGGCCG CTGCAGCGGG CGCGCGCGTG GCCAAGCACG GCGGGCGCAG CGTGTCGTCG
AGCTCGGGCA GCGCCGACGT GCTGGAGGCG CTGGGCGCGC ACATCAACCT GACGCCCGAG
CAGGTGGCGA TCTCGCTCGA ACGCTGCGGC ATCGGCTTCA TGTTCGCGCC GAATCACCAC
GCGTCGATGA AACACGCCGC GCCGGTGCGC AAGGAGCTGG GCGTGCGCAC GATCTTCAAC
ATCCTCGGGC CGCTCACCAA CCCGGCGCTG GCGCCGAACC AGGTGATGGG CGTGTTCCAC
CCCGACCTGG TCGGCATCCA GGTGCGCGTG CTGCAGCGCC TGGGTTCGAG CCACGTGCTG
ATCGTGCACG GCATGAACGG CATGGACGAG ATCTCGCTGT CGGGCGAGAC GATGATCGGC
GAGCTCAAGG CCGGCCAGAT CAGCGAATAC GTCGTGCACC CGGCCGACTT CGGCCTGCCG
GTCTACGACA CGCGGGTGCT CAAGGTGGCG AACAAGGAGG AGTCGGTGAC GTGCATCCAG
CGCGCGCTGG CCAACGAGGA CGGCCCCGTG CGCGACATCG TGCTGCTCAA CGCCGGCGCC
GCGCTGTACG CGGCCGACGT GGTGACGTCG ATCACCGACG GCGTGCGTGC CGCGCGCGAG
GCGGTGGCTT CGGGCCAGGC GCTGGCCAAG CTGAGCCAGT ACGTGGCGGT CACGCAGTCG
TTCAAGACCG CGGTCTGA
|
|---|
| Protein sequence | MSIANIDALT RVIDHREIFH DEMLALMRRI MSGEMSPVMI AAFAIGLRVK KETIGEIAAA
AQVMREFATP VAVPDKTNLV DLCGTGGDGV HTFNISTASM FVAAAAGARV AKHGGRSVSS
SSGSADVLEA LGAHINLTPE QVAISLERCG IGFMFAPNHH ASMKHAAPVR KELGVRTIFN
ILGPLTNPAL APNQVMGVFH PDLVGIQVRV LQRLGSSHVL IVHGMNGMDE ISLSGETMIG
ELKAGQISEY VVHPADFGLP VYDTRVLKVA NKEESVTCIQ RALANEDGPV RDIVLLNAGA
ALYAADVVTS ITDGVRAARE AVASGQALAK LSQYVAVTQS FKTAV
|
|---|
| |