Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3853 |
Symbol | |
ID | 6161206 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4320088 |
End bp | 4321839 |
Gene Length | 1752 bp |
Protein Length | 583 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641666626 |
Product | sodium/hydrogen exchanger |
Protein accession | YP_001792872 |
Protein GI | 171060523 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0569] K+ transport systems, NAD-binding component [COG4651] Kef-type K+ transport system, predicted NAD-binding component |
TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGGCG AGTCGGGGCT CTGGTACAAC ACCCGTCGCA TGGAACACAA CATCTCGCTC ATCACCACGC TGGCCGCCGG CTTCGGCATC GCCCTGATCC TGGGGTTCAT CGCCGAGCGC ATCAAGATGC CGGCGCTGGT GGGCTACCTG GTGGCGGGCA TCCTGATCGG CCCGGCCACG CCGGGCTTCG TGGCCGATGT CGGCATCGCG GCGCAGCTGT CGGAGATCGG CGTGATGTTG CTGATGTTCG GCGTCGGGCT GCATTTTTCG CTCGACGACC TGCTGGCGGT CCGGCGCATC GCGGTGCCCG GCGCGGTGGT GCAGATGGGT TTCGCGACGG CGCTGGGCAT GGCGCTGGCC TCGTGGTGGG GCTGGAGCCT GGGCAACGGG CTGATCTTCG GGCTGTCGCT GTCGTGCGCG AGCACGGTGG TGCTGCTCAA GGCGCTCGAG GCGCGCGGCG TGCTCGAGAC CATGAACGGC CGCATCGCGG TCGGCTGGCT GGTGGTGGAA GACCTCGCCA CCGTGCTGGT GCTGGTGCTG ATGCCGCCGC TGGCCGGCGT GCTGGGCGGC ACGGTCGATC CGGCCGACAG CGCCGGCCCG CTCTGGATCA CGATCGGCAA GACCTTGCTG CAGGTCTCTG CCTTCATCGC GCTGATGCTG ATCGCCGGGC GCCGCGTGCT GCCCTGGCTG CTGTCGCACA TCGCGCGCAC CGGCTCGCGC GAGCTGTTCA CGCTGTCGGT GATCTCGGCG GCGATCGGCA TCGCCTACGG CGCGGCGGCG CTGTTCGGCG TGTCGTTCGC GCTCGGCGCC TTCTTCGCCG GCATGGTGAT GCGCGAATCC GAGTTCAGCC ACCGCGCCGC CGAAGAATCC CTGCCGTTGC GCGATGCCTT CTCGGTGCTG TTCTTCGTCT CGGTGGGCAT GCTGTTCGAG CCGGCGATCC TGGTCGAGCA GCCCGGGCGC GTGCTCGGCG TGGTCGCCAT CATCATCGTC GGCAAGTCGA TCGCGGCGCT GGCGCTGACG CTGGCGTTCC GCTACCCGCT CAACACCGCG CTGACGGTGG CGGCCAGCCT GGCGCAGATC GGCGAGTTCT CGTTCATCCT GGCCGGGCTG GGCATGGCGC TCGGCCTGCT GCCGGCCGAG GGCATGAGCC TGGTGCTGGC CGGCGCGCTG ATCACGATCG CGCTCAATCC CTTCCTGTTC GCCGCCATCG CGCCGTTGCG CCGCTGGCTG CTCGGGCGCT CCGAACTGGC GCGCAGCCTG GAGCGGCGCG AGGACCCCTA TGCCGAGCTG CCGATGAGCA CCGAGCGCAA GTTCCTCGCC GGCCAGGTGG TGCTGGTGGG CTACGGACGG CTCGGGCGCC GCATCGCCGA GGCGCTGGCG CAGCGCGGCA TCCCCTACGT GGTGGCCGAG GAGAACCGCG AGCAGGTCGA GCGCCTGCGC AACCAGGGCA TCGCCGCGGT GTCGGGCAAT GCCGCCGATC CGGCGGTGCT GATCCAGGCC CACATCGCCG ACGCCTCGAT GCTGGTGGTG ACGATTCCCG ATCCGGTCGA CGTCCGGCTG ATGGCCGACA CCGCCCGCAC CCTCAACCCG GACATCGAGA TCGTGCTGCG CAGCGACAGC GAGGACGAGT CCGAACTGCT GCGCAAGCAG GGCATCGGCA CCGTGTTCTT CGGCGAGGAG GAACTCGCCC GCGGCATCAC CGGCCACGTG CTGCAGCGCT TCGCGCCGCG GCCGGGCGCG CTGGTGTCCT GA
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Protein sequence | MAGESGLWYN TRRMEHNISL ITTLAAGFGI ALILGFIAER IKMPALVGYL VAGILIGPAT PGFVADVGIA AQLSEIGVML LMFGVGLHFS LDDLLAVRRI AVPGAVVQMG FATALGMALA SWWGWSLGNG LIFGLSLSCA STVVLLKALE ARGVLETMNG RIAVGWLVVE DLATVLVLVL MPPLAGVLGG TVDPADSAGP LWITIGKTLL QVSAFIALML IAGRRVLPWL LSHIARTGSR ELFTLSVISA AIGIAYGAAA LFGVSFALGA FFAGMVMRES EFSHRAAEES LPLRDAFSVL FFVSVGMLFE PAILVEQPGR VLGVVAIIIV GKSIAALALT LAFRYPLNTA LTVAASLAQI GEFSFILAGL GMALGLLPAE GMSLVLAGAL ITIALNPFLF AAIAPLRRWL LGRSELARSL ERREDPYAEL PMSTERKFLA GQVVLVGYGR LGRRIAEALA QRGIPYVVAE ENREQVERLR NQGIAAVSGN AADPAVLIQA HIADASMLVV TIPDPVDVRL MADTARTLNP DIEIVLRSDS EDESELLRKQ GIGTVFFGEE ELARGITGHV LQRFAPRPGA LVS
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