Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3843 |
Symbol | |
ID | 6161958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4306699 |
End bp | 4307952 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641666616 |
Product | NO3-/NO2-ABC transporter |
Protein accession | YP_001792862 |
Protein GI | 171060513 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATGC CCCAAGACCC GGTGACGCCC GTGAACCTGC CGCGACGCGA TTTTCTTCAA CGTGCTGCCG CCGTGTCCGG CGCGCTGGCC GTGCCCGGCG GCGCGTGGGC GGCCGGCTCC GATGCGCCCG AGAAGAAGGA GGTGCGCATC GGCTTCATCC CGCTGACCGA CTGCGCCTCG GTGGTGATGG CCTCGGTGCT GAAGTTCGAC GAGAAGTACG GCATCAAGAT CATCGCGAGC AAGGAAGCTT CCTGGGCCGC CGTGCGCGAC AAGCTGGTCA ACGGCGAGCT CGACGCCGCG CACGTGCTCT ACGGCCTGGT CTACGGCGTG CATCTGGGCA TCAGCGGCCC CAAGAAGGAC ATGGCCGTGC TGATGACGCT CAACAACAAC GGCCAGGCGA TCACGCTGTC GAAGAAGCTG GCCGACAAGG GTGCGGTCGA CGGCGCCGGG CTGGCCAAGC TGATGAAGGC CGAGCCGCGC GAATACACCT TCGCGCAGAC CTTCCCGACC GGCACCCACG CGATGTGGCT GTACTACTGG ATGGCGGCCA ACGGCATCAA CCCGATGACC GACGCCAAGG TCATCGTGGT GCCGCCGCCG CAGATGGTGG CCAACATGCG CGTGGGCAAC ATGGACGGCT TCTGCGTCGG CGAGCCCTGG AACCACCGCG CCATCATGGA CGGCATCGGC GTGACCGCGG TCACCACGCA GGACATCTGG CGCGACCACC CCGAAAAGGT GCTGGGCGCG ACCAACGACT TCGTCACCAA GAACCCGAAC ACCGCCCGCG CGATGGTGAT GGCCATCCTC GAGGCCAGCC GCTGGATCGA CACCGGCCTG CAGAACAAGA TGAAGATGGC CGAGACGGTG GCCGAGAAGT CGTACATCAA CACCTCGGTC GACGCCATCA ACCAGCGCAT CCTGGGCCGC TACCAGAACG GCATGGGCAA GACCTGGGAC GACCCGAACC ACATGAAGTT CTTCAACGAC GGCGCGGTCA ACTATCCGTA CGTGTCCGAC GGCGCCTGGT TCCTGACCCA GCACAAGCGC TGGGGCCTGC TCAAGGCCGA CGTCGACTAC CTCGGCGTGG CCCGCGCGAT CAACAAGACC GAGATCTACA AGCAGGCGGC TGCGCAGGTC AAGGTCAACC TGCCCAAGAG CGACATGCGC AGCAGCAAGC TGATCGACGG CGTGGTCTGG GACGGCAAGG ATCCGGCCAA GTACGCCGCG GGTTTCAAGA TCAAGGTGGC CTGA
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Protein sequence | MTMPQDPVTP VNLPRRDFLQ RAAAVSGALA VPGGAWAAGS DAPEKKEVRI GFIPLTDCAS VVMASVLKFD EKYGIKIIAS KEASWAAVRD KLVNGELDAA HVLYGLVYGV HLGISGPKKD MAVLMTLNNN GQAITLSKKL ADKGAVDGAG LAKLMKAEPR EYTFAQTFPT GTHAMWLYYW MAANGINPMT DAKVIVVPPP QMVANMRVGN MDGFCVGEPW NHRAIMDGIG VTAVTTQDIW RDHPEKVLGA TNDFVTKNPN TARAMVMAIL EASRWIDTGL QNKMKMAETV AEKSYINTSV DAINQRILGR YQNGMGKTWD DPNHMKFFND GAVNYPYVSD GAWFLTQHKR WGLLKADVDY LGVARAINKT EIYKQAAAQV KVNLPKSDMR SSKLIDGVVW DGKDPAKYAA GFKIKVA
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