Gene Lcho_3821 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3821 
Symbol 
ID6160445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4285697 
End bp4286341 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content65% 
IMG OID641666594 
Productcytochrome C oxidase assembly protein 
Protein accessionYP_001792840 
Protein GI171060491 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3175] Cytochrome oxidase assembly factor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.171251 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACCG AACCGAACCG GCAAGGCCTT GGCGCGCGGC CCCAGTCGCG GGCCCTGCGG 
CGCGACAACT TCCAGATGCT GTCCAAGCTG GGGTTGGTCG CGTTGATGAT GTTCGGCTTC 
GGCTACGCGC TGGTGCCGAT GTACAAGGCC ATCTGCACGG CCCTGGGCAT CAACGTGCTG 
AGCGTCTCGG AGCTGCGCGT CAACGGCCAT GGCAAGGCCG ACCCGGCCGG CAACAGCCAG 
GTCGACCGCA GCCGGCTGAT CACGATCGAG TTCGATGCGA ACGCGCGCGG TCCTTGGGAC 
TTCAAGCCCG CGCAGCGTTC GGTGCAGGTG CATCCGGGTG AAGTGACGAC GGTGATGTAC 
GAGTTCCGCA ACGTGCAGAA CCGCACCATG GCCGCGCAGG CGATCCCGAG CTACGCGCCG 
ATGCAGGCGA CCGCGCACTT CAACAAGCTC GAGTGCTTCT GCTTCAACGA ATACACCCTG 
GCTCCCGGCG AAGCCAAGAG CTGGCCGGTG GTGTTCGTGA TCGATCCGAA GCTGCCCAAG 
GACGTGACCA CGATCACCTT GTCGTACACC TTCTTCGAGG TCGGCGCCAA GATCAAGGCC 
GCCGGCGCCG AGGTCAAGGC CGCAGCCGCG CCGGTTCGCT CATGA
 
Protein sequence
MATEPNRQGL GARPQSRALR RDNFQMLSKL GLVALMMFGF GYALVPMYKA ICTALGINVL 
SVSELRVNGH GKADPAGNSQ VDRSRLITIE FDANARGPWD FKPAQRSVQV HPGEVTTVMY 
EFRNVQNRTM AAQAIPSYAP MQATAHFNKL ECFCFNEYTL APGEAKSWPV VFVIDPKLPK 
DVTTITLSYT FFEVGAKIKA AGAEVKAAAA PVRS