Gene Lcho_3800 details

Gene Information

• Locus tag: Lcho_3800
• ID: 6160788
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4266149
• End bp: 4266679
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 641666573
• Product: CheW protein
• Protein accession: YP_001792819
• Protein GI: 171060470
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0835] Chemotaxis signal transduction protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 47
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGTCATGA CACACAGCGC AGCGGCGGCA GCCGAGCAGA GGCAGTACCT GACCTTCATG 
CTCGGCGGCG AGATGTTCTC GCTCGACATC CTGTGCATCA AGGAAATCAT CTGGTACGCC 
GGCGTCACCG AGGTGCCGAT GATGCCGGCC TGCATCCGCG GGGTGATCAA CCTGCGCGGC 
GCGGTGGTGC CGGTGATGGA CCTGTCGAAC CGCTTCGGCA AGCCCTCGAC GCCGCAGAGC 
AAGAGCACCT GCATCGTCAT CACCGAGGTC GCCAGCGGCC CCGGCGGCGA GCGCCAGAAC 
ATGGGCGTGG TGGTCGACGC GGTGCAGGCG GTGCTGGAGA TCCCGGCCTC CGAGATCGAG 
CCGCCGCCGA CCTTCGGCGC CAAGATCCGC AGCGACTTCA TCGAAGGCAT CGCCAAGGTG 
AACGGCAAGT TCGTGATCCT GCTGAACGTG CAGCAGGTGC TGTCGCGCAG CGAGATCGGC 
GCGATGGGCC AGGCGGCAGC GGCCGCCGAG GCCGGGCTGG TCGCCGCCTG A 

 

Protein sequence

MVMTHSAAAA AEQRQYLTFM LGGEMFSLDI LCIKEIIWYA GVTEVPMMPA CIRGVINLRG 
AVVPVMDLSN RFGKPSTPQS KSTCIVITEV ASGPGGERQN MGVVVDAVQA VLEIPASEIE 
PPPTFGAKIR SDFIEGIAKV NGKFVILLNV QQVLSRSEIG AMGQAAAAAE AGLVAA