Gene Lcho_3779 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3779 
Symbol 
ID6161910 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4239080 
End bp4239742 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content65% 
IMG OID641666552 
Producthypothetical protein 
Protein accessionYP_001792798 
Protein GI171060449 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAATTCA AGACCACCCA TCTTTTCGCC GCTGCCGCTG CGGTTTCTGC GGCGACGTTG 
CTGGCGGGCT GCGCGTCCGC ACCCGATGCG GCCGAATTCG ACAAGCAGGC CTCGGCCATG 
ATGAAGGCGT CATTCCGCGA CAACGGCATC GCCAAGGTCG ATCGCCTGCA GCAGGACCTG 
AGCAATGCCG AGTGCTCCAA GGCCGGCGCG GGCAGCCCGC CCGAAGCCGT TGCCAAGGCG 
ATCGAGGCGG CCAACCTGAA GCTCGTCAAA TGGCCCAGCG ACGGCAAGTT CCTGGGCGAC 
TGGAAGAACG GCGAAAAGCT CGCCCAGAGC GGTCGCGGCA TGACCTGGAG CGACAAGACC 
ACCGACCCCA AGGACAACGG CGGCAACTGC TACAACTGCC ACCAGATCAG CAAGTCCGAG 
ATCTCCTACG GCACCATCGG CCCGAGCCTG TACCAGTACG GCAAGCTGCG CGGCGTGAGC 
GATCCGGCCA GCGCTGCGGC CAAGCCGATC GTCGAATACA CCTGGGGCAA GCTGTGGAAC 
TCGCGGGCCT ACAACGCCTG TTCGCAGATG CCGCGCGCCG GCCACAACGG CGTGCTCGAC 
GAGCAGCAGA TCCGCGACAT CATGGCGCTG CTGCTCGACC CGAAATCGCC CGTCAACCAA 
TGA
 
Protein sequence
MQFKTTHLFA AAAAVSAATL LAGCASAPDA AEFDKQASAM MKASFRDNGI AKVDRLQQDL 
SNAECSKAGA GSPPEAVAKA IEAANLKLVK WPSDGKFLGD WKNGEKLAQS GRGMTWSDKT 
TDPKDNGGNC YNCHQISKSE ISYGTIGPSL YQYGKLRGVS DPASAAAKPI VEYTWGKLWN 
SRAYNACSQM PRAGHNGVLD EQQIRDIMAL LLDPKSPVNQ