| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3767 |
|---|
| Symbol | |
|---|
| ID | 6162954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4227514 |
|---|
| End bp | 4228896 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641666540 |
|---|
| Product | ribulose bisphosphate carboxylase |
|---|
| Protein accession | YP_001792786 |
|---|
| Protein GI | 171060437 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1850] Ribulose 1,5-bisphosphate carboxylase, large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAAT CGAACCGTTA TGCCGACCTC AGCCTGCGCG AAGAAGAGCT GATCCGCGGT
GGCCGCCACA TCCTCGTGGC CTACAAGATG AAGCCCAAGC CGGGCCACGG CTACCTCGAG
GCGGCGGCAC ATTTCGCGGC CGAGTCGTCG ACCGGCACCA ATGTCGAGGT CAGCACCACC
GACGAGTTCA CCAAGGGCGT CGACGCGCTG GTCTACCTGA TCGACGAGGC GAGCGAGGAG
ATGCGCATCG CCTACCCGCT CGACCTGTTC GACCGCAACA TCACCGACGG CCGGATGATG
ATGGTGTCGT TCCTGACGCT GGCGATCGGC AACAACCAGG GCATGGGCGA CATACAGCAC
GCCAAGATCT ACGACTTCTG GATGCCGCCG CGCGCGATCC AGCTGTTCGA CGGCCCGAGC
AAGGACATCT CCGACCTCTG GCGCATGCTC GGGCGCCCGC TCAAGGACGG CGGCTACATC
GCCGGCACCA TCATCAAGCC CAAGCTCGGC CTGCGCCCCG AGCCCTTCGC CGAAGCGGCC
TACCAGTTCT GGCTGGGCGG CGACTTCATC AAGAACGACG AGCCGCAGGG CAACCAGGTC
TTCGCGCCGA TGAAGAAGAC GCTGCCGCTG GTCTACGACG CGATGAAGCG TGCGATGGAC
AAGACCGGCG AGGCCAAGAT CTTCTCGGCC AACATCACCG CCGACGACCA TTACGAGATG
CTGGCGCGTG GCGAGTTCGT GCTCGAGACC TTCGGGCCGG ACGCTGACAA GGTGGCCTTC
CTGGTCGACG GCTACGTGGG CGGTCCCGGC ATGATCACGA CCGCGCGGCG CTGCTTCCCG
AACCAGTACC TGCACTACCA CCGCGCCGGC CATGGCGCCG TCACCAGCCC GAGCGCCAAG
CGTGGCTACA CCGCCTACGT GCTGGCCAAG ATGAGCCGGC TGCAGGGCGC CAGCGGCATC
CACGTCGGCA CGATGGGCTA CGGCAAGATG GAAGGCGAAC ACGACGACCG CGCCATCGCC
TACATCATCG AGCGCGACAG CTACACCGGC CCGGCCTATC ACCAGGAGTG GTACGGCATG
AAGCCGACCA CGCCGATCAT CAGCGGCGGC ATGAACGCGC TGCGGCTGCC GGGTTTCTTC
GAGAACCTGG GCCACGGTAA CGTCATCAAC ACCGCGGGCG GTGGCTCGTA CGGGCATATC
GATTCCCCGG CCGACGGCGC CACCTCGCTG CGCCAGGCCT ACGAGTGCTG GAAGGCCAAG
GCCGATCCGA TCGAGTGGGC GAAGGAGCAT CGCGAATTCG CGCGTGCCTT CGATTCGTTC
CCGAAGGATG CGGATGGGTT GTACCCGGGC TGGCGTGACA AGCTTTCTGG CGTGCATCGT
TGA
|
|---|
| Protein sequence | MDQSNRYADL SLREEELIRG GRHILVAYKM KPKPGHGYLE AAAHFAAESS TGTNVEVSTT
DEFTKGVDAL VYLIDEASEE MRIAYPLDLF DRNITDGRMM MVSFLTLAIG NNQGMGDIQH
AKIYDFWMPP RAIQLFDGPS KDISDLWRML GRPLKDGGYI AGTIIKPKLG LRPEPFAEAA
YQFWLGGDFI KNDEPQGNQV FAPMKKTLPL VYDAMKRAMD KTGEAKIFSA NITADDHYEM
LARGEFVLET FGPDADKVAF LVDGYVGGPG MITTARRCFP NQYLHYHRAG HGAVTSPSAK
RGYTAYVLAK MSRLQGASGI HVGTMGYGKM EGEHDDRAIA YIIERDSYTG PAYHQEWYGM
KPTTPIISGG MNALRLPGFF ENLGHGNVIN TAGGGSYGHI DSPADGATSL RQAYECWKAK
ADPIEWAKEH REFARAFDSF PKDADGLYPG WRDKLSGVHR
|
|---|
| |