| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3752 |
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| Symbol | |
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| ID | 6164022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4208989 |
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| End bp | 4209702 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641666525 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001792771 |
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| Protein GI | 171060422 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTGCC TCGCCATCAG CTTCGACCTC GACGGCACCC TGGTCGAAAC CGCCGACGAG
ATCGCGCGGG CCGTCAACCT GACGCTGGTC GATTTCGACC TCGCGCCCCG CCCGCCGGCC
GAGATCGAAC AGCTGATCGG CGACGGCCTG CGCGCGCTGA TGATCAAGCT GCTGGCGCGC
ATCCTGATGG AACAGCCGGC GCGCGTCGAG TGGCTCGATA CCGACGCGCT GCTGGCGCGG
CTCGACGCGC ATTACGCCGC GGTGGTCGGC AGCACCGCGC GCGCCTATCC CGGCGTGCGC
GAGGCGCTGC AGCAACTGCG TGACGCCGGC CTGCCGCTGG CCTGCGTCAC CAACAAGGAA
GGCCGCCACG CGCAGCGCGT GCTCGATGCG GCCGGCCTGT CCGACCTGAT CGACGTGCTG
GTGGCCGGCG ACACGCTGGC GCACAAGAAG CCGCACCGCT CGGTGCTGAT CACGACCGCG
CAGCTGTTGA AGGTCAAGCC CGGCGCGCTG GCGCATGTGG GCGATTCGCG CACCGACATC
GAGGCCGCCC GCAATGCCGG CGTCGCGGCG TGGGCCGTGC CCTACGGCTA CAACGGCGGC
GAGCCGGTGG CGCTGGCGCA GCCGCAGCGG CTGTTCGCGC AGATCGCCGA CGTCGCCCGC
CATGTGCTCG GCGGCTGCGA GCCTGCGCAC CAGCCGGCCG GCGCGCTGCA CTGA
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| Protein sequence | MSCLAISFDL DGTLVETADE IARAVNLTLV DFDLAPRPPA EIEQLIGDGL RALMIKLLAR
ILMEQPARVE WLDTDALLAR LDAHYAAVVG STARAYPGVR EALQQLRDAG LPLACVTNKE
GRHAQRVLDA AGLSDLIDVL VAGDTLAHKK PHRSVLITTA QLLKVKPGAL AHVGDSRTDI
EAARNAGVAA WAVPYGYNGG EPVALAQPQR LFAQIADVAR HVLGGCEPAH QPAGALH
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