| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3741 |
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| Symbol | |
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| ID | 6163826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4197234 |
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| End bp | 4199396 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641666514 |
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| Product | HlyD domain-containing protein |
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| Protein accession | YP_001792760 |
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| Protein GI | 171060411 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACGC TGACCGCCCC GCCCGGCGCC ACCTTCATGC TCGATGCGCC GCGCCCGCCC
GCCGCGCCCG CCCCGTGGCC CGCGCTGCGC GACGATCTGC AACTGCATCA CGGCCCGGCG
CTGCCGGACG GCCAGCCGAG CTGGACGCTG CACGACCCCG TGCGGCATCG TTTCCTGCGC
ATCGACTGGC TGAGCCACGA GGTGCTGCGG CACTGGTGGC TGCGTGACGC GGCGCTGATC
GCCGAGCAGA TCAGCCAGCA GACCACGCTG GCGGTCGAGC CCGAACAGGT CAAGCAGGTG
CTGACCTGGG CCGTGCGCGA GGAGCTGGTG CTGCCCGTCG CGCCGCCGCC TGCTGGCAGG
TCGAGCGCCG ACAACCCGCT CGGCGCCGTC GCCACCTGGC TGCTGCACCA CTACCTGTTC
TTCCGCATCC CGCTGTTCAA CCCCGACCGC CTGCTGCAGC GTCTGCTGCC GTGGGTCAGC
GGCCTGGGCT CGCGGCGCTT CGGCCAGTTG ACGCTGGCGG CGCTGGCCTT CGGCCTGATC
GGCCTGGCGC GCCATGCCGA GCAGTTGCAG GCGCAGTGGC TGGATCTGCT GTCGTGGCGC
GGGCTGGCGC TCTACGGGCT GACGCTCACC CTCGTCAAGG TGGCGCACGA GTTCGGCCAC
GCGCTGGTCG CCAAGCACCA CGGCCTGCGC GTGCCGACCA TGGGCGCGGC CTTCATGGTG
ATGTGGCCGG TGGCCTACAC CGACACCAGC GAGGCCTGGC GCCTGGCCGA CCCGCGCGCC
CGGCTGCAGA TCGCCGCCGC CGGCGTGCGC ACCGAGCTGA CGCTGGCCGC CTGGGCCACG
CTCGCCTGGG TGCTGCTGCC CGACGGCGGC TTGCGCACCG CCGCGTTCAT CGTCGCGACG
ATGACGTGGG TGAGCACGCT GCTGATCAAC ACCAGCCCGT TCATGCGCTT CGACGGCTAC
TTCCTGCTGT GCGACCTGCT CGACATGCCC AACCTGCACG AGCGCTCGTT CGCGCTGGCG
CGCTGGCAGC TGCGGCGCAG CGTGCTGGGC TGGCAGGCCG AGGCGCCCGA GGCGCTGACG
CCCGGCTGGC AGCGCGCGCT GATCGCCTTC GCCTGGGCCA CCTGGGCCTA CCGGCTGGTG
CTGTATCTGG GCATCGCCTG GATGGTCTAC CACTTCGGTT TCCCGGCGCT CGGGCTGCTG
CTGTTCGCGG TCGAGATGGG CTGGTTCATC GCCGCGCCGA TCCAGCGCGA GCTGGGCCTG
TGGCGACAGG GCTGGCCGCG CTGGCGCGGC GCCGTGCGCT GGATCTGGAG CCTGCTCGGC
CTGCTGCTGA TCGGCAGCCT GGCCGCCCTG CCCTGGCCGG TGCGCGAGAC CGCCGGCGCC
GTGCTGCGAC CGGCGCAGGA GCTGGCGCTG CGCATGCCCG CCACCGCCAC GCTGCGCGCG
CTGCCGTTGC AGCCGGGCCA GCGCATCGCG GCCGGCACGC CGCTGCTGAT GGCCGAGGTA
CCGATGCTGC AGCGCAAGCT CGATTCCAGC GCCGTGCGCA TCCGCCAGCT CGGCCAGCAG
GTCGCGTCGG CCAGCCTGAG CGGCGACCAG CAGGCGCAAT GGCAATCGCT GCAAGCCGAC
CTGGCCACCG CCCGCGGCGA GGCCGCCGCG CTGCGCCAGG AGCTGGTGCG CTATCGGCCG
GTGGCACCGT TCGATGCGCT CGTGGTCGAG GTCGACCCCA GCCTGCGCGC CGGCATGGTG
GTCGGCCCCC AGCAGACGCT GATGCGGCTG GCCAGCGCCG GCCCGGGTCG CGTGCTGGCT
TATGTGTCCG AGTCCGCGGC CAGCCGCCTG AAAGCGGGCG ACCGCGCCAC TTTCGGCGCC
GACGCCAACC CGCTGGCGCG CTGGGACGCG CACATCGTCA ACGTGGCGCC GCACGCGTCG
GCAACGCTGG CCGAGCCGAT GCTCGCGCGC AGCCACGGCG GCCCGATCGA GGCGCGCGAG
CAGTCCGGCC GCTGGCTGCC GCTGCAGCCG CTGTACCGGG TCGAACTGCA GCTCGATGCC
GACCCCGGCC TGAGCCCGCG CCACTGGCGC GGCCATGTGG TGATCGAGCT GCCCGGGCGC
AGCCTGTGGG AACGCGGCTG GACCGCCGCG GCCGAGGTGC TGGCGCGCGA AGTGGGCTTC
TGA
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| Protein sequence | MSTLTAPPGA TFMLDAPRPP AAPAPWPALR DDLQLHHGPA LPDGQPSWTL HDPVRHRFLR
IDWLSHEVLR HWWLRDAALI AEQISQQTTL AVEPEQVKQV LTWAVREELV LPVAPPPAGR
SSADNPLGAV ATWLLHHYLF FRIPLFNPDR LLQRLLPWVS GLGSRRFGQL TLAALAFGLI
GLARHAEQLQ AQWLDLLSWR GLALYGLTLT LVKVAHEFGH ALVAKHHGLR VPTMGAAFMV
MWPVAYTDTS EAWRLADPRA RLQIAAAGVR TELTLAAWAT LAWVLLPDGG LRTAAFIVAT
MTWVSTLLIN TSPFMRFDGY FLLCDLLDMP NLHERSFALA RWQLRRSVLG WQAEAPEALT
PGWQRALIAF AWATWAYRLV LYLGIAWMVY HFGFPALGLL LFAVEMGWFI AAPIQRELGL
WRQGWPRWRG AVRWIWSLLG LLLIGSLAAL PWPVRETAGA VLRPAQELAL RMPATATLRA
LPLQPGQRIA AGTPLLMAEV PMLQRKLDSS AVRIRQLGQQ VASASLSGDQ QAQWQSLQAD
LATARGEAAA LRQELVRYRP VAPFDALVVE VDPSLRAGMV VGPQQTLMRL ASAGPGRVLA
YVSESAASRL KAGDRATFGA DANPLARWDA HIVNVAPHAS ATLAEPMLAR SHGGPIEARE
QSGRWLPLQP LYRVELQLDA DPGLSPRHWR GHVVIELPGR SLWERGWTAA AEVLAREVGF
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