Gene Lcho_3736 details

Gene Information

• Locus tag: Lcho_3736
• ID: 6163821
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4178269
• End bp: 4180296
• Gene Length: 2028 bp
• Protein Length: 675 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641666509
• Product: histidine kinase
• Protein accession: YP_001792755
• Protein GI: 171060406
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 44
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCGTTCG CGCGGTTCCG GTCGCTGTCG ATCCGCAACA AGCTGCTGGC GATGGTGCTG 
CTGCCGCTGG CCGGCGTGCT GCCGCTGCTC GGCCTGCTGC TGCTGTGGTG GGGCAACGAG 
GCGTTCGACC GGATGCTGAT CACCAAGATC CGCGCCGATC TGGCGGTGGC CCAGGGCTAC 
TTCGAGCGGG TGCAGGTCGA GGTGGGTGCC AGCACCGCCT CGGTGGCCGA TTCGCACGCG 
CTGCACCTGG CGCTGGCGCA GCCCGGCGAC GCCGCGATCG TGGCCCTGCT GCAGCACGCC 
AAGGTGCACG AGCGGCTCGA CTTCATCAAC CTGCGTGCAG CCGACGGCAC GCTGCGAGCC 
TCCGACAGCG GCCCGGCCCG CGCGACGGAG CCCGCCTCAC CGGCGCGGCG CTGGGCCGAT 
GGCGGCACCG GCCACACCAG CGTCGAGATC CTGCAGGTCG CGCAGCTCGA CGCCCTGGCC 
AGCGGCCTGC GCGAGCGGGT CGAGCTGCCG CTGCTGCCGA CCCGCGACGC CGCACCGACC 
GAGCGAAAGC GCGAAGACCG CGCGATGGTG CTGCTGGCCA CCCGCGCGGT GCGCGACAGC 
GACGGCCGCC TGCTCGGCCA CGTGCAGGGC GGCCTGCTGC TCAACCGCAA CCTGCCGTTC 
ATCGACCACA TCAACGGCAT CGTCTACCCC GAGGGCTCGT TGCCCTTCGG CAGCCGCGGC 
ACCGCCACGC TGTTTCTCGA CGACGTGCGC ATCAGCACCA ACGTGCGGCT GTTCGGCCCG 
GCCAAGGACG AACGCGCGAT CGGCACGCGG GTTTCGCAGG TGGTGCGCGA CGCCGTGCTG 
GTGCGCGGCC AGACCTGGCT CGACCGCGCC TTCGTCGTCA ACGACTGGTA TGTCTCGGCC 
TACCAGCCGA TCGCCAACGG CGCCGGCCAG CGCGTGGGCA TGCTCTACGT CGGCTACACC 
GAGCGGCCCT TCACGCTGCT GAAGTACGCC GCGCTGGCGA GCATCGGCGT GATCTTCTTC 
GCGGTGATGA TCGTGGCGGG CTTCGTATCG CTGCGCTGGG CACGCACGAT CTTCCGGCCG 
ATCGAGCAGA TGGCGGACAC CATGCGCGAC GTCGAAGCCG GCCGGCTCGA AGCGCGCGTG 
GGTGCCGTGC GCAGCGGCGA CGAACTCGGC CGGCTGGCCG GGCACCTCGA CCGCCTGCTC 
GACGTCATCG ACGACAAGAC CCGCGCCCTG CAACGCTGGA ACGCCGAGCT CGACGCCAAG 
GTGGCGCAGC GCACCGCCGC GCTCGAAGCG CGCACCCGCG AGCTGGCGGC GGCGCAGTCG 
CAACTGCTGC GCAGCGAAAA GCTCGCCGCG GTGGGCCAGC TCACCGCCAG CATCGCGCAC 
GAAGTCAACA ACCCGATCGC GGTGATCCAG GGCAACCTCG ACGTGCTGCG CAGCCAGCTG 
CCCGCAGCCA CCGCGGCCAC CGTCCACACC GAACTGCGCC TGATCGACGA GCAGATCGAG 
CGCATGCGGC TGATCGTGAC GCAGCTGCTG CAGTTCGCCA AACCGGCCGA ATACGCCGGC 
TACATCGCGC CGGTCGACAC CGCGCGAGTG CTCGACGACT GCCTGGTGCT GGTCGGCCAC 
CTGCTGGCGC GCACCCGCAT CACGGTGCAG CGCGATTTCA CCGCCACGCG CCAGCCCGGC 
ATCAACCGCA ACGAGCTGCA GCAGGTGCTG GTGAACCTGC TGGTCAACGC CATCCACGCC 
ATGCCCGAGG GCGGCGCGCT CGGCCTGGCC ACCCGCGATG TCGAGCCCGA CAGCGTGGCG 
ATCTCGGTCA CCGACAGCGG CGCCGGGCTC GACGTCGAGC TGATGGACCA GCTGTTCCAG 
CCGTTTGTCA CGCGCAAGAA GGACGGCACC GGCCTGGGCC TGTGGATCAG CCGCAGTCTG 
GTCGAGCGCT ACGGCGGCGA CCTGCGCGCC GCCAACCGCA GCGACGGCGT GATCGGTGCG 
GAATTCACGG TCCTGCTGCG GCGCGAACCG GACACCGCCG GCAGCTGA 

 

Protein sequence

MAFARFRSLS IRNKLLAMVL LPLAGVLPLL GLLLLWWGNE AFDRMLITKI RADLAVAQGY 
FERVQVEVGA STASVADSHA LHLALAQPGD AAIVALLQHA KVHERLDFIN LRAADGTLRA 
SDSGPARATE PASPARRWAD GGTGHTSVEI LQVAQLDALA SGLRERVELP LLPTRDAAPT 
ERKREDRAMV LLATRAVRDS DGRLLGHVQG GLLLNRNLPF IDHINGIVYP EGSLPFGSRG 
TATLFLDDVR ISTNVRLFGP AKDERAIGTR VSQVVRDAVL VRGQTWLDRA FVVNDWYVSA 
YQPIANGAGQ RVGMLYVGYT ERPFTLLKYA ALASIGVIFF AVMIVAGFVS LRWARTIFRP 
IEQMADTMRD VEAGRLEARV GAVRSGDELG RLAGHLDRLL DVIDDKTRAL QRWNAELDAK 
VAQRTAALEA RTRELAAAQS QLLRSEKLAA VGQLTASIAH EVNNPIAVIQ GNLDVLRSQL 
PAATAATVHT ELRLIDEQIE RMRLIVTQLL QFAKPAEYAG YIAPVDTARV LDDCLVLVGH 
LLARTRITVQ RDFTATRQPG INRNELQQVL VNLLVNAIHA MPEGGALGLA TRDVEPDSVA 
ISVTDSGAGL DVELMDQLFQ PFVTRKKDGT GLGLWISRSL VERYGGDLRA ANRSDGVIGA 
EFTVLLRREP DTAGS