Gene Lcho_3727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3727 
Symbol 
ID6162536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4168174 
End bp4168818 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content69% 
IMG OID641666500 
Product4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 
Protein accessionYP_001792746 
Protein GI171060397 
COG category[C] Energy production and conversion 
COG ID[COG0437] Fe-S-cluster-containing hydrogenase components 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.298076 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCGAA TGAAATTCAT CTGCGACTCG GAGCGCTGCA TCGAGTGCAA CGGCTGCGTC 
ACCGCCTGCA AGGCCGAACA CGACGTGCCG TGGGGCGTCA ATCGCCGCCG TGTGGTCACG 
CTCAATGACG GCGTGCCGGG CGAGAAGAGC ATCTCGGTGG CCTGCATGCA TTGCAGCGAT 
GCGCCGTGCA TGGCGGTGTG CCCGGTCGAC TGCTTCTACC GCACCGACGA CGGCGTGGTG 
CTGCACGACA AGGACATCTG CATCGGCTGC GGCTACTGCA GCTACGCCTG CCCGTTCGGC 
GCGCCGCAGT TCCCGAGCAA CGGTGCCTTC GGCCTGCGTG GCAAGATGGA CAAGTGCACC 
TTCTGCGCCG GCGGCCCCGA GGCCAACGGC AGCGAGGCCG AGAACGAGAA GTACGGCCGC 
AACCGCTTGG CCGAAGGCAA GCTGCCCGCC TGCGCCGAGA TGTGCAGCAC CAAGGCGCTG 
CTCGGCGGCG ACGGCGACGT GGTGGCCGAC ATCTTCCGCA CCCGCGTCAT CACCCGCAAC 
AAGGGCAGCG AGGTCTGGGG CTGGGGCACC GCCTACGGCA AGCCCCCCGG CGGCCCGTCC 
GGCCCGGCCG CGCAGCCGGC CAAGCCCGAG GGCAGCAAGT CATGA
 
Protein sequence
MARMKFICDS ERCIECNGCV TACKAEHDVP WGVNRRRVVT LNDGVPGEKS ISVACMHCSD 
APCMAVCPVD CFYRTDDGVV LHDKDICIGC GYCSYACPFG APQFPSNGAF GLRGKMDKCT 
FCAGGPEANG SEAENEKYGR NRLAEGKLPA CAEMCSTKAL LGGDGDVVAD IFRTRVITRN 
KGSEVWGWGT AYGKPPGGPS GPAAQPAKPE GSKS