Gene Lcho_3715 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3715 
Symbol 
ID6162195 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4157850 
End bp4158476 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content71% 
IMG OID641666488 
ProductTetR family transcriptional regulator 
Protein accessionYP_001792734 
Protein GI171060385 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.158333 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCCGAC GCACCAAAGA AGAAGCCGCT GCCACCCGCG AACACCTGCT CGACACCGCC 
GAGCAGGTGT TCCTGGCGCG TGGCGTGTCG CGCGCCAGCC TGCTCGACAT CGCCGCCGCC 
GCCGGGCTGA CCCGCGGGGC GATCTACTGG CACTTCAAGG ACAAGGCCGA GCTGTTCCTG 
GCGATGCTCG ACCGCATCAT GCTGCCCTGC GAAGCGGCGT CTTGCGACCT GACGCTGCAG 
GCCGGCGGAG ATTTCGAGCA AATGCTGCGC CAGGCGGTGC TGCAGCCGCT GCAGCGCCTG 
TGCGCCGACG AGCGCACGCG GCGGGTCTTC ACCGTCATCA TCCACCGCAC CGAATACGGC 
GACGACATGC TCAGCGTGCG CACGCGCCAC CTGCAGGCCA TCGCCGACTG GACGGCCGGC 
ATGGCGACCC TGCTGCGCAG CGCCCGCCAG CAGCGCCTGA TCCACGCCGA CGTCGACCCC 
GACCTGGCCG CCCGCGGCCT GTTCGCGCTG GTCGACGGCC TGCTCAGCCA GGCCACGCTG 
GCGTCCGACC CGGCCACGAT GCTGGCGGCG GGCGAGCAGG CGGTGTCGAT CTTCCTGGCA 
GGGCTGCGGG CCGATCGGAC CGCCTGA
 
Protein sequence
MVRRTKEEAA ATREHLLDTA EQVFLARGVS RASLLDIAAA AGLTRGAIYW HFKDKAELFL 
AMLDRIMLPC EAASCDLTLQ AGGDFEQMLR QAVLQPLQRL CADERTRRVF TVIIHRTEYG 
DDMLSVRTRH LQAIADWTAG MATLLRSARQ QRLIHADVDP DLAARGLFAL VDGLLSQATL 
ASDPATMLAA GEQAVSIFLA GLRADRTA