| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3712 |
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| Symbol | |
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| ID | 6162192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4151784 |
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| End bp | 4153220 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641666485 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001792731 |
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| Protein GI | 171060382 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0255068 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCAAC CTTCACTCCT GACGCTGTCC GCCGCGCTGC TGCTGGCCGG TTGCGGCAGC
CTGGCGCCCA CCTACGAGCG CCCGGCCGCG CCGGTGCCGA CCCAGTTGCC GCTCGCGGCG
GCCGAAGCCG CATCGGCCAG TGCGGCCCCC GCCGCGCCGC TGGCCTGGCA GGACTTCGTG
CGCCACCCGG CGCCGCGCCG GCTGGTCGAG CTGGCGCTGG CCAACAACCG CGACCTGCGG
GTGGCTGCGC TCAACGTCGA ACGCGCCCGC GCCCAGCTCG ATGTCTCGCT GGCCGATCGT
TATCCGACGA TCGGCGTGGG CGTCGCCGCC AACAGCGCGC CCAACACGCA ATCGGGCAAC
CAGGCCCAGA GCTACACCGC CGGGCTGCAG ATGGCGAGCT GGGAGCTCGA CTTCCTCGGC
CGCATCGGCA ACCTGAACGA CGCCGCCCGC TCGCAGCTGC TGGCCACCGA AGCCGGCCGG
CGCAGCGCCG AGCTGGCGCT GGTGGGCGCG GTGCTGTCGA GCTACCTGAA CCTGGTGGCC
GATGCGCAGC TGCTCGGCGT GGCCGAGCGC ACCCTGGCCA GCCGCGAAGC CACCTTCAAG
CTCACGCGCA TCAAGTCGGA TGCGGGCGCG GCCTCGAAGC TGGAGGAGCA GAGCGCCGTC
ACGCTGCTGG CGCAGGCCCG CGTGGCGCGC CAGCAGGCGC TGCGCCAGCG CAGCCAGGAC
CTCGCCACGC TGGCGCTGCT GCTCGGCGGG CCGGTGCCCG ACGACGCGGT GCCGCAGCCG
CCGGTGCTCG ATCCGGCCGG CGACACGTCT GCACCTGCAC CGGACGACGC CGGCGCCGAC
GCGGCCTGGG CCGCGCTGCT GGCCGAGGTG CCGGTCGGTT TGAGCTCCGA GGTGCTGCTG
CGCCGTCCGG ACGTGGTGCA GGCCGAACAG CAGCTGCAGG CCGCCAACGC CAACATCGGC
GCGGCGCGGG CGGCGATGTT CCCGCGCATC ACGCTGACCG CCAGCGCCGG CCAGGCGTCG
AGCCAGTTCA GCGGCCTGTT CCAGGGTGGC AACTTCGCAT GGACGCTCGG TGCGCAGGCG
CTCATGACGC TGTTCGACGC CGGCCGCAAC CAGGCCAACG TCAACGCCAG CAAGGTCGGC
CGCGACATCG CGGTGGCGCA GTACGAGCGC GCGGTGCAGG CCGCCTTCAA GGATACCGCC
GATGCGCTGA ACGGCCTTGC CACCTGGCGC GACCAGCGCC AGGCTCAGGC CGATCAGCTC
GCCAGCGCGC GCGAGATCGC CCGCCTGACC GAGCTGCGCT ACGGCGCCGG CGCAGCCAGC
GAACTCGAAC GCCTGGACGC CCAGCGCAGC CTGTATGCCG CCGAGCAGGC GCTGGTCCAG
ACCCGGCTGG CCGAGCAGCA GAACCGGGTC GGGCTGTGGA AGGCGCTGGG CGGCTGA
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| Protein sequence | MSQPSLLTLS AALLLAGCGS LAPTYERPAA PVPTQLPLAA AEAASASAAP AAPLAWQDFV
RHPAPRRLVE LALANNRDLR VAALNVERAR AQLDVSLADR YPTIGVGVAA NSAPNTQSGN
QAQSYTAGLQ MASWELDFLG RIGNLNDAAR SQLLATEAGR RSAELALVGA VLSSYLNLVA
DAQLLGVAER TLASREATFK LTRIKSDAGA ASKLEEQSAV TLLAQARVAR QQALRQRSQD
LATLALLLGG PVPDDAVPQP PVLDPAGDTS APAPDDAGAD AAWAALLAEV PVGLSSEVLL
RRPDVVQAEQ QLQAANANIG AARAAMFPRI TLTASAGQAS SQFSGLFQGG NFAWTLGAQA
LMTLFDAGRN QANVNASKVG RDIAVAQYER AVQAAFKDTA DALNGLATWR DQRQAQADQL
ASAREIARLT ELRYGAGAAS ELERLDAQRS LYAAEQALVQ TRLAEQQNRV GLWKALGG
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