| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3707 |
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| Symbol | |
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| ID | 6162807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4146630 |
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| End bp | 4147943 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641666480 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001792726 |
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| Protein GI | 171060377 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.00914113 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAAGACAC TGCCGCCCTC CTCCGCAACC GCCGCCGCGC TGTCCGACCT GCTCGGCAAC
GATGCCGGCC CATCCCGCTG GCGCCGAAGC GTGCCCTGGC TGATCGGCAC CGTGCTGATC
GCCGCCGCCG GCGCGGGCCT GTGGTTCGCC TTCGGTCCGT CGCAGACCGC CCCGGTGCGC
TACACCACCG AGCCGCTGGC GCGTGGCGAC CTGGCGCTGA CCGTCACCGC CAACGGCAAG
ATCCAGCCGA CCCGCTCGGT CAGCATCGGC AGCGAGCTGT CGGGCATCGT CGCGCGGGTG
CGGGTGGACG TGAACGACCG CGTCAAGAAG GGCCAGGTGC TGGTCGAGCT CGACACCGCC
AAGCTGCTCG ACCAGATCAC CCGCACCCGC GCCAGCCTCG CCGCCGCGCA GGCCGGCGTG
GCGCAGGCCG CCGCCGCCGC CAAGGAGTCG CGCGCCAACC TGGCGCGGCT CGAAGAAGTG
CAGCGCCTGT CGGGCGGCCA GGTGCCGGCG CCGGCCGAGA TGGACAGCGC GCGCGCCGCG
CTCGACAAGG CGATCGCCGA GCAGGCCAGC GCCCAGGCCG CGGTGGCGCA GGCCCGCGCC
ACGCTCAGCA CCGACGAGAC CAACCTCGGC CGCGCCTCGA TCCGCTCGCC GATCGACGGC
GTGGTGCTGA CGCGCTCGGT CGACCCCGGC AACGCGGTGG CAGCGTCGCT GCAGGCGGTC
ACGCTGTTCA CGCTGGCGGA GGATCTGACG CAGCTGCAGC TGTCGGTCAA CGTCGATGAA
GCCGACGTGG CGCAGGTGCA GGACGGCCAG AGCGCCAGCT TCACCGTCAG CGCCTGGGCC
GGGCGGCGTT ATCCGGCGAC GGTGACGCGG GTGGCCTACG GCTCGACGCT GACCGACAAC
GTCGTCACCT ACACCACGCT GCTGAGCGTG GACAACGCCG ACCTCAGCCT GCGCCCGGGC
ATGACCGCGG TGGCCACCAT CGCCACCAAC GAGCGCCGGC AGGTCTGGCT GGTGTCCAAC
CGGGCGCTGC GCTACAGCCC AGGCAACGGC ACGGCATCGG CACCCAGCCG CAGCGTGGTC
TCGCAACTGA TGCCGCGCAT CCCCGGCTCG AACCGGCCGC GCAGCGCCAC CACCGCCGCG
CCGGTGGCCG GCCAGGCCGG GCGCATCTGG GTGCAGGAAG GCAGCGCCGC GCCACGCGCC
ATCACCGTCA GCATCGGCCT GAGCAACGGC CGGCAGACCG AAGTGAGCGG CGAGGAACTG
CGCGAAGGCC TGCAGGTGCT GACCGGTGAA ACGAGCGCGG GGGCGCAGCC ATGA
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| Protein sequence | MKTLPPSSAT AAALSDLLGN DAGPSRWRRS VPWLIGTVLI AAAGAGLWFA FGPSQTAPVR
YTTEPLARGD LALTVTANGK IQPTRSVSIG SELSGIVARV RVDVNDRVKK GQVLVELDTA
KLLDQITRTR ASLAAAQAGV AQAAAAAKES RANLARLEEV QRLSGGQVPA PAEMDSARAA
LDKAIAEQAS AQAAVAQARA TLSTDETNLG RASIRSPIDG VVLTRSVDPG NAVAASLQAV
TLFTLAEDLT QLQLSVNVDE ADVAQVQDGQ SASFTVSAWA GRRYPATVTR VAYGSTLTDN
VVTYTTLLSV DNADLSLRPG MTAVATIATN ERRQVWLVSN RALRYSPGNG TASAPSRSVV
SQLMPRIPGS NRPRSATTAA PVAGQAGRIW VQEGSAAPRA ITVSIGLSNG RQTEVSGEEL
REGLQVLTGE TSAGAQP
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