| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3706 |
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| Symbol | |
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| ID | 6162806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4145137 |
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| End bp | 4146633 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641666479 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001792725 |
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| Protein GI | 171060376 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0175295 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCGAC CTCGATCCGA TCCGACAAGC ACCGGGCACA CGTCGCCCGA CACCACCGGC
CCACGCCGCA GGGCCTGGGC GGTCTGGTGT TGCGGCGCCG CCCTGCTGGC CGGCTGTGCG
ACGCCGTTGC CATCCGAGCG CAGCGACGCG GCGCCACCGA TCGCCGTGCC CGGGTCGTGG
GCGGTTCGGC CCGCCGGCCA CGCCGACGCC GACTCCGCGC CGATCGACGG CGCCGCCCTG
GCCCGCTGGT GGCGCAGCTT CGACGATCCG CTGCTGGGCG AACTGGTCGA ACGCGCGCTG
GCGGCCAACA CCGACCTGCA ACTGGCGCGC AGCCGCGTCA TCCAGGCGCG GGCGCTGCGT
GATGTCAGCG CCGCCGCTGC CTCGCCCAAC CTCGACCTCT CCGGCAGCGT CGGCACCAGC
CAGTCCGGCC GCGGCAGCAG CGCGCTGCGC AGCAACAGCT GGCGCGCCGG GCTCGACGCC
AGCTGGGAAA TCGACGTCTG GGGCCGCCTC GGTGCCGGCA CCCGCGCCGC CGAGCTGGAC
CTGGCCACCA GCCGCGCCGA CCGCGCCACC ACCGAAGCCG GCGTCGCCGC CGAGGTCGGC
CTGGCCTACG TGCAACTGCG TGGCAGCCAG CGCCAGCTGC GCATCGCCCG CGACAACCTC
GCCGCGCTCG AACAGACCGC CCAACTGACG CAATGGCGCG CCCAGGCCGG GCTGGTCAGC
TCGCTCGACG CCGAACAGGC CCGCGCCAGC ACCGCGCAGC AGCGCGCCTC GATCGGGCCG
CTGCAGAACA GCGTCGTGCA GGCCGAACAC CGCATCGCCG TGCTGCTGGG CCAGCCGCCC
GGCACGCTGC GCGCGTTGCT CGGCAGCGCC GACGAGCGCA TCACCCCGCC GATCCCGCTC
GCCGCGCCGA TGCCCGCCGG CGTGCCGGCA CAGGTGCTGC GCCAGCGCCC CGACGTGCGC
GCCGCCGAGC TGGCCATCGA CGCCGAAAGC CAGCGCCTGG CCGCCAGCCG CGCCGCCGGT
CGGCCGTCGT TCGCGATCAG CGGCACGCTG GCCTTGCAGG CCGCCACGCT CGGCGCGCTC
GGCAACCCGG CCGCGACGCT CGCCACGCTG GGGGCGGCGG TGAACTGGCC GCTGTTCGAC
GGCGGCGCCC GCGCCGCGCA GATCCAGGCG CAGCAGGCAG TCCAGGCGCA GGCGCAGATC
CGCTACCAGG CGGCGGTGCT GACGGCGCTG GAGGATGTCG AAAACGCCCT CGCCGACCAG
ATCTACACCC AAAGCCGCCT GGCCGCCTAC GAGGCCGGCG TGGCCTCGGC GCGCAACGCC
CTGCTGCTGG CGCGCCAGCG CTACCAGGCC GGGCTGGTCG ACTTCTCGAC CCTGCTCGAA
GCCCAGCGCA CCGCGCTCTC GCTCGACAAC GGCCTGGTCG CCGCTCAGAC CGATCTGAGC
CTGGGCCGCA TCCGACTCAA CAAGGCGCTC GGCGGTGGCT GGGCGGAAGA AGAATGA
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| Protein sequence | MHRPRSDPTS TGHTSPDTTG PRRRAWAVWC CGAALLAGCA TPLPSERSDA APPIAVPGSW
AVRPAGHADA DSAPIDGAAL ARWWRSFDDP LLGELVERAL AANTDLQLAR SRVIQARALR
DVSAAAASPN LDLSGSVGTS QSGRGSSALR SNSWRAGLDA SWEIDVWGRL GAGTRAAELD
LATSRADRAT TEAGVAAEVG LAYVQLRGSQ RQLRIARDNL AALEQTAQLT QWRAQAGLVS
SLDAEQARAS TAQQRASIGP LQNSVVQAEH RIAVLLGQPP GTLRALLGSA DERITPPIPL
AAPMPAGVPA QVLRQRPDVR AAELAIDAES QRLAASRAAG RPSFAISGTL ALQAATLGAL
GNPAATLATL GAAVNWPLFD GGARAAQIQA QQAVQAQAQI RYQAAVLTAL EDVENALADQ
IYTQSRLAAY EAGVASARNA LLLARQRYQA GLVDFSTLLE AQRTALSLDN GLVAAQTDLS
LGRIRLNKAL GGGWAEEE
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