Gene Lcho_3689 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3689 
Symbol 
ID6161087 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4125299 
End bp4126057 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content65% 
IMG OID641666462 
ProductABC transporter-related protein 
Protein accessionYP_001792708 
Protein GI171060359 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0411] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCCCG TCCAAGGACC TGCCCTCCTC AAGGTCACCG ACCTGAAAAA GTCCTACGGC 
GCGATCCGCG CGGTGGGCGG CGTGAGCTTC GACGTGCGTC CCGGCGAGAT CTTCGGCGTG
ATCGGCCCGA ACGGCTCGGG CAAGACCACG ATGTTCAACA GCGTGCTCGG CCAGATCACG
CCCGACGCCG GCCGCATCGA GCTCAACGGC CGCGACATCA CGAATCTGAG CCCGCTCGAA
CTCAACCGCC GCGGCGTCGG CCGCACCTTC CAGACCCTGC AGGTATTCGG CAAGATGACG
GTGCGCGACA ACCTGATCGT CGCCGCGCAG GAGCACCAGG GCACGATGTT CAGCCGCATG
TTCGCGCCGG GTGATTCGGG GCTGGGCGCC AAGGCCGACG AGCTGATCGA CCTGTTCCGC
ATCCGCCACG TCGCGCACAA GAAGGCCGGC GAGCTGAGCT ACGGCCAGCA GAAGCTGGTC
GACATCGCGA TGGCCTTCAT GAGCGAGCCC GACCTGGTGC TGCTCGACGA GCCGTGTGCG
GGTGTCAACC CGAGCCTGGT GGGCGGCATC AGCACGCTGC TCAAGCAGCT CAACCAGAAG
CAGAAGGGCT CGTTCGTGGT GATCGAGCAC AACATGGACT TCGTGATGGA CCTGTGCCAC
CGCATCATGG TGATGGTCGA GGGCCAGGTG ATGGCGATCG GCACGCCGGC CGAGATCCGC
GCCAACAAGC AGGTGCTCGA CGCCTACCTG GGGAATTGA
 
Protein sequence
MSPVQGPALL KVTDLKKSYG AIRAVGGVSF DVRPGEIFGV IGPNGSGKTT MFNSVLGQIT 
PDAGRIELNG RDITNLSPLE LNRRGVGRTF QTLQVFGKMT VRDNLIVAAQ EHQGTMFSRM
FAPGDSGLGA KADELIDLFR IRHVAHKKAG ELSYGQQKLV DIAMAFMSEP DLVLLDEPCA
GVNPSLVGGI STLLKQLNQK QKGSFVVIEH NMDFVMDLCH RIMVMVEGQV MAIGTPAEIR
ANKQVLDAYL GN