| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3674 |
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| Symbol | |
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| ID | 6160422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4108038 |
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| End bp | 4109369 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641666447 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001792693 |
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| Protein GI | 171060344 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCA TTGCATCCGG AGGCCTGATC TTCGCCGCGC TGATGGCGAT GCTGGTGGTG
CGCGTGCCGA TCGGCATCGC CATGTTCATG GCCGGTGCCG GCGGCTACTT CGCGTTGAGC
GGCATGGACG CCACGCCGCT GCTGGCGTCG CTGAAGAACC TGGCCTATGC GCGGCTGTCC
AACTACGACC TGGTGGTGAT CCCGCTGTTC CTGCTGATGG GCCAGTTCGC CACCAACGGT
GGCCTCAGCC GCAGCCTGTT CCGCTTCGTC AGCGCCTTCA TGGGCCACTG GCGCGGCGGC
ATCGCGATGG CGTCGATCGG CGCCTGCGCC GGCTTCGGCG CGATCTGCGG TTCGTCGCTC
GCCACGGCCG CGACGATGGG CCAGGTGGCG CTGCCCGAGC TCAAGCGCCA CCGCTATTCC
GGCGCGCTGG CCACCGGCTG CCTGGCTGCC GGGGGCACGC TGGGCATCAT GATCCCGCCG
TCGGTGCCGC TGGTGATCTA CGCCATCCTG ACGCAGGAGT CGATCGGCAA GCTGTTCATG
GCCGCGGTGC TGCCGGGCCT GATCGCGATG GTCGGCTACA TGGTCGTGGT GCAGATCATC
GTGCGCCTCA AGCCCGACGC CGGCCCGGCC GGCGAGCCGG TGCCGTGGCC CGAGCGCCTG
AAGGCGATGG CCGAGGTGCT GCCGGTGCTG GTGGTGTTCG CGGTGGTGAT CGTGGGCATC
TACGGCGGCT GGGCCAACCC GACCGAAGCG GCAGCGATCG GCGCGGCGGC CTGCGGCGCG
CTGGCCGTGC TGCGCGGGGG CATGCGCTGG CCGGGCATCC TGGAGAGCGC GCTCGGCACC
GCCAGCGCCA CCGCGATGAT CTTCCTGGTG CTGCTGGGCG CCGACATGCT CAACAGCGCG
CTGGCGCTGT CGCAGATGCC GGCCGAACTG GCCGCCTGGG TGCAGGCCGC CGGTTTCCCG
CCGCTGCTGG TGATGGTGGC GATCCTGCTC GTCTACCTGT TCCTCGGCTG CGTGATGGAC
AGCCTGGCGA TGATCCTGCT GACCATTCCC ATCTTCTACC CGGTGGTGAT GGGGCTGGAC
TTCTGGGGCC TGTCGCAGGT CGACAAGAGC GTCTGGTTCG GCATCCTGGC GCTGATGGTG
GTCGAGATCG GACTGGTGCA CCCACCGGTG GGCATGAACG TCTACATCAT CAACCGGCTG
GCCCGCGACG TGCCGCTGAC CGAGACCTTC AAGGGCGTGA TGCCCTTCCT GGCCTCGGAC
CTGGTGCGCA TCGTCGCGCT GCTGTTCTTC CCCTCGCTCT CGCTGGTGCT CGTGCGCACG
TTCGGCAGTT GA
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| Protein sequence | MSGIASGGLI FAALMAMLVV RVPIGIAMFM AGAGGYFALS GMDATPLLAS LKNLAYARLS
NYDLVVIPLF LLMGQFATNG GLSRSLFRFV SAFMGHWRGG IAMASIGACA GFGAICGSSL
ATAATMGQVA LPELKRHRYS GALATGCLAA GGTLGIMIPP SVPLVIYAIL TQESIGKLFM
AAVLPGLIAM VGYMVVVQII VRLKPDAGPA GEPVPWPERL KAMAEVLPVL VVFAVVIVGI
YGGWANPTEA AAIGAAACGA LAVLRGGMRW PGILESALGT ASATAMIFLV LLGADMLNSA
LALSQMPAEL AAWVQAAGFP PLLVMVAILL VYLFLGCVMD SLAMILLTIP IFYPVVMGLD
FWGLSQVDKS VWFGILALMV VEIGLVHPPV GMNVYIINRL ARDVPLTETF KGVMPFLASD
LVRIVALLFF PSLSLVLVRT FGS
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