| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3651 |
|---|
| Symbol | |
|---|
| ID | 6162474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4076271 |
|---|
| End bp | 4077278 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641666424 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001792670 |
|---|
| Protein GI | 171060321 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATC CCAAATCTCT CTTCGTCGCG CTGTGCTTCG CGCTGCTGGC GGTCTATCCG
CTGGTCTCGG GCAGCTACGG CATCGACCTG GTCAGCAAGA TCATGATCTT TGCGGTGCTG
GCGCTGAGCC TCGAACTGCT GGTCGGCAGC ACCGGCCTGG TGTGCTTCGG CCAGGCGGCG
TTCTTCGGCA TCGGTGCCTA TGCGGCGGTG CTGCTGTCGC CCGAAGGCGA GGCCGCGGCG
CTGTGGTGGG TGCTGCCGGC CAGTGTGTTG GCGGCGGCGC TGTTCGCGCT GCTGATGGGC
GCGCTGTCGC TGCGCACCAA GGGCGTGTAC TTCATCATGG TGACGCTGGC GTTTGCGCAG
ATGGCCTACT ACATCGTGCA CGACACGCCG CTGGGTGGCG GCACCGACGG CATCTACCTC
TACGTCAAGC CGGTGCTTGC GCTGGGCGGC GCGACGCTGA TCGACCTCGA CCGGCCGATG
CTGTTCTACG CCTTCACCTG GGCCTGCCTG CTCGGCGTGT TCGGCTTCCT GGCGCTGCTG
CTGCGCTCGC GCTTCGGCCG CGCGCTGGCG GGCATCAAGG TCAACGAGCA GCGCATGCGC
GCCACCGGTT TCTCGACCTA TCCGTACAAG CTGGCGGCGT TCGTGATCTC GGGCGGCATC
GCCGGGCTGG CGGGTTTCCT GTTCGGCGTG AAGGACGGTT TCGTCAATCC CGAGCTGATG
AGCTGGCACA TGTCGGGCGC TGTGCTGATC ATGATCATCC TCGGCGGCCT GGGCCACTTG
CGCGGCGCGC TGATCGGTGC ATTCGCGTTC GCGCTGCTGC AGGAGTTCTT CAAGTCGGAG
GCGATCTTCG GCGCCTTCGC CAAACATTGG CACCTGGGCC TGGGTCTGAC CATCATCGCC
AGCGTGGCCC TGCTGCCGCG CGGGCTGGTG GGCGTGCCGC AACAACTGCG TGAACGGCTC
GAAGGTCGGC TCACGGGGGC GCGTCGCGCC GATGGGAGTC GTGCATGA
|
|---|
| Protein sequence | MTNPKSLFVA LCFALLAVYP LVSGSYGIDL VSKIMIFAVL ALSLELLVGS TGLVCFGQAA
FFGIGAYAAV LLSPEGEAAA LWWVLPASVL AAALFALLMG ALSLRTKGVY FIMVTLAFAQ
MAYYIVHDTP LGGGTDGIYL YVKPVLALGG ATLIDLDRPM LFYAFTWACL LGVFGFLALL
LRSRFGRALA GIKVNEQRMR ATGFSTYPYK LAAFVISGGI AGLAGFLFGV KDGFVNPELM
SWHMSGAVLI MIILGGLGHL RGALIGAFAF ALLQEFFKSE AIFGAFAKHW HLGLGLTIIA
SVALLPRGLV GVPQQLRERL EGRLTGARRA DGSRA
|
|---|
| |