Gene Lcho_3648 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3648 
Symbol 
ID6162685 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4074029 
End bp4074643 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content69% 
IMG OID641666421 
ProductTetR family transcriptional regulator 
Protein accessionYP_001792667 
Protein GI171060318 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTCA CCAAGGCACA GGCGCAAGCC AATCGAACCC ATGTCGTCGA GACGGCTTCC 
CGGCTGTTTC GCGAGCGGGG CTTCGATGGG GTCGGCGTTG CCGATCTGAT GGCCGCTGCG 
GGCTTCACTC ACGGCGGTTT CTACAAGCAC TTCGGCTCCA AGGCCGACCT GATGGCGGAG 
TCGACAGCTT GCGGCATCAC GCAGACCCTG GCGCTGACCG AAGGCGTGGA GGTATCGGAG 
TTCGTCCGGC ACTACCTCTC GCGCGAGCAC CGCGACGGAC GCAGCACCGG CTGCACGATG 
GCTGCGCTCG GTGGAGACGC CGCACGGCAA CCGGAGTCGG TCCGGGGCGC CTTTGCGGAC 
GGCGTCGAGA GCCTGCTGGC GGCACTGAGC CACCAACAGA GCAGCCCGTC GGACGCGGTC 
GACGCTGCGC AGGCGCGAGC CAGGATCCTC GATGCCTTGA CGCACGCGGT GGGGGCCCTC 
GTCGTGTCGC GGGCCTGCCC GGACGATTCA CCGCTGGCCG ATGAAGTCCT GGCGGTCAGC 
CGGGATGCCA TCCTCGCGTC GCTGCAACCG CGACTGGCCG CGAGGCCCAG CTCCCGCAGG 
CGCAACACGG GCTGA
 
Protein sequence
MKVTKAQAQA NRTHVVETAS RLFRERGFDG VGVADLMAAA GFTHGGFYKH FGSKADLMAE 
STACGITQTL ALTEGVEVSE FVRHYLSREH RDGRSTGCTM AALGGDAARQ PESVRGAFAD 
GVESLLAALS HQQSSPSDAV DAAQARARIL DALTHAVGAL VVSRACPDDS PLADEVLAVS 
RDAILASLQP RLAARPSSRR RNTG