| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3637 |
|---|
| Symbol | |
|---|
| ID | 6163172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4062278 |
|---|
| End bp | 4063135 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641666410 |
|---|
| Product | protocatechuate 4,5-dioxygenase subunit beta |
|---|
| Protein accession | YP_001792656 |
|---|
| Protein GI | 171060307 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGA TCACCGCATC CGTTTTCACC TCGCATGTGC CCGCCATCGG CGCGGCCATC
GATCTCGGCA AGACCACCGA ACCCTACTGG GTGCCGCTGT TCGCGGGCTA CGAGCCCAGC
AAGCAGTGGA TGAAGGACAA CAAGCCCGAC GTGATCTTTC TGGTCTACAA CGACCACGCC
ACGGCCTTCA GCCTGGAGAT GATCCCGACC TTCGCGATCG GCTGTGCGGC CGAGTTCCAG
CCGGCCGACG AAGGTTACGG CGCTCGCCCG GTGCCCACCG TGATCGGCCA CCCTGACCTC
GCCTCGCACA TCGCGCAGAG CGTGATCCAG GACGACTTCG ACCTCACCAT CGTCAACAAG
ATGGACGTCG ACCACGGCCT GACCGTGCCG CTGAGCCTGA TGTGCGGCGA GCCTGATGCC
TGGCCGTGCC CGGTGATCCC GTTTGCCGTC AACGTGGTGC AGTACCCGGT GCCGTCGGGC
CAGCGCTGCT TCAAGCTCGG CCAGGCGATC CGCCGCGCGA TCGAGAGCTA CGACCAGCCG
CTGAACGTGC AGATCTGGGG CACCGGCGGC ATGAGCCACC AGTTGCAAGG CCCGCGTGCC
GGCCTGATCA ACCGCGAGTG GGACAACGCC TGGCTCGACA AGCTGATCGA GGACCCCGAG
GCAGCCGCCG CCACGCCGCA CATCGACTAC GTGCGCGAAG CCGGCTCGGA AGGCATCGAG
CTCGTCATGT GGCTGATCGC GCGCGGTGCG ATGGCCGATG TGGCCGGCGG CCCCAAGCCG
ACCGTGCGGC ACCGCTTCTA TCACGTGCCG GCATCGAACA CGGCCGTGGG CCACGTGATT
CTCGAGAACA ACGTTTAA
|
|---|
| Protein sequence | MAKITASVFT SHVPAIGAAI DLGKTTEPYW VPLFAGYEPS KQWMKDNKPD VIFLVYNDHA
TAFSLEMIPT FAIGCAAEFQ PADEGYGARP VPTVIGHPDL ASHIAQSVIQ DDFDLTIVNK
MDVDHGLTVP LSLMCGEPDA WPCPVIPFAV NVVQYPVPSG QRCFKLGQAI RRAIESYDQP
LNVQIWGTGG MSHQLQGPRA GLINREWDNA WLDKLIEDPE AAAATPHIDY VREAGSEGIE
LVMWLIARGA MADVAGGPKP TVRHRFYHVP ASNTAVGHVI LENNV
|
|---|
| |