| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3634 |
|---|
| Symbol | |
|---|
| ID | 6163231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4059589 |
|---|
| End bp | 4060530 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641666407 |
|---|
| Product | phosphogluconate dehydrogenase, NAD-binding,-like protein |
|---|
| Protein accession | YP_001792653 |
|---|
| Protein GI | 171060304 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.75811 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGATC CGAAGCTCTG GCATGTCGGC CTGATCGGCT ACGGCGAGGT CGGCCGCATC
CTGGCCGAAG ACCTGCGCGC ACAGGGCGTG CACGTCACCG CCTACGACCT CAAGCTCGAC
CACGCCGACA GCGCCGAGGC CTTGCGCATC CACGCACAGG CTCACGGTGT GAGCCTGGCC
GAGTCGCATG CCGAACTGGC CCACGGCACC GACTTCATCG TCAGCGCGGT GACCGCCAGC
CAGGCGGTGC CGGTGGCGCA GGCCTGCGTG GCGGCGATCA AGCCGGGCGC GTTTTTCCTC
GACTTCAACT CGGCCTCGCC GGGCGCCAAG CAGCGCGCGG CAGCGCTGAT CGACACCGCC
GGGGCGCGTT ATGTCGAAGG CGCGGTGATG ACCAGCATCC CGCCGTATCG GATCAAGGTG
CCGCTGCTGC TGGGCGGCGC GGCGGCGGCC GAGCTGTCGC CGCTGATCAA CGCGCTGGGT
TTCGCGTCCC GGGTGGCGAG CGAGCGCCTC GGCGTGGCCT CGGCCACCAA GATGTGCCGC
AGCGTGATGA TCAAGGGCCT GGAGGCGATG GTGATCGAGA GCTTCACCAC GGCGCGCCAC
TACGGTGTCG AGGATGCGGT GATCGCCTCG CTGCACGAGA CCTTCCCCGG CATCGACTGG
GAGAAGCAGG CTGCCTACTT CTTCCAGCGC GTGATCGAAC ACGGCCGCCG GCGCAGCGAA
GAGGTTCGCG AAGTGGCCGA GACCGTGCGC GATGCCGGCC TCGAACCCTG GAGCGCCGCC
GGCACCGCCG AGCGCCAGGC CTGGATCGCC GATCGGGCCG ACGACGGCCT GTTCGGCAGC
AAAGGCACCC CCGAATTCGC CCGCAGCGCC GACTGGCGCA CGGAGGCCGA CCGCATCCTC
GGCCATGTGC AGGCGTCGGC CTCCCCATCC AACAAGGATT GA
|
|---|
| Protein sequence | MADPKLWHVG LIGYGEVGRI LAEDLRAQGV HVTAYDLKLD HADSAEALRI HAQAHGVSLA
ESHAELAHGT DFIVSAVTAS QAVPVAQACV AAIKPGAFFL DFNSASPGAK QRAAALIDTA
GARYVEGAVM TSIPPYRIKV PLLLGGAAAA ELSPLINALG FASRVASERL GVASATKMCR
SVMIKGLEAM VIESFTTARH YGVEDAVIAS LHETFPGIDW EKQAAYFFQR VIEHGRRRSE
EVREVAETVR DAGLEPWSAA GTAERQAWIA DRADDGLFGS KGTPEFARSA DWRTEADRIL
GHVQASASPS NKD
|
|---|
| |