| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3621 |
|---|
| Symbol | |
|---|
| ID | 6163300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4043316 |
|---|
| End bp | 4044314 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641666394 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001792640 |
|---|
| Protein GI | 171060291 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.000356841 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCGCG GGCTGCGGCG GATCCGCCTG CCTCGCCATG TCATGCCGCT GATGGCGGCG
GCCGTGGCGC TGCTGCTGTT CGCGCTGGTC TTGCGCAGTG TCGACCTGGC GCAGCTCACG
CGCAGTGCGG CGGCGTTGCC GCCGCAGGTC TGGCTGGCCA CGCTGGCCGG CGCGTTCGCC
AGCTTCGGCC TGCGCGCCGC GCGGCTGTGG CTGGAGTGGC GCAGCCGCGC GCGGGTCGAC
TACCGCAGCT GCCTGCGGCT GTTCCTGCTG CACAACGCCG CGGTGGCGTG GCTGCCGCTG
CGCAGCGGTG AAGCGGTCTA TCCGTGGTGG TTGCACCGGC GCTGGCAGGT GCCACTGCAC
GACGCCGCGG CCAGCCTGCT GTGGCTGCGC CTGCAGGACG CGCTGGTGCT CGGCGCCCTG
ACGCTGGCCT GCTTCGGCCC CGGCTCCATC GGCACGTCGA CCCTGCTCGC GGTGCTGCTG
TCGCTGCTGG CGCTGACGCT CGGTGCGCGG CTGCAATCCA ATGGACTGGC CCGGTGGGAT
CGCGCCATGC AAGCCGCCTC GTCCACACAG ACCCCTGCCC CGGCGCGCGC CTTCACACGC
CACGCCGATC GCCTGCTGCA GGCCAGCCGC GCCAGCCGCG GCGGCCGGCT CGCCTGGTGC
TGCTGCCTGG CCAACTGGCT GATCAAGCTC GCCGCGGTGG CGTGGCTGCT CGGTGCGCTG
GCCGGCCTGC CGGGCGGCGA TGCCTGGCGC GGCGCGATCG CCGGCGAGTG GGCCGCCGTG
CTGCCGCTGC ACGGCCCGGC CGGCCTCGGG CCTTACGAGG CCGGCATCTG GCTCGGTGCC
ACCGTCCACG ACCCGGCGGG TGCGCTGCCG TGGGCCGAGC TGACCGGCGC CGCGCTGCTG
GCACACCTGT GCTGGCTGCT GGCCGCTGCC CTCGGCGCCG CTGGCGCGCT GCTGCTCGAT
CCCCTTCCCA AGACCCCTCG ACCGAGGACA TTGCCATGA
|
|---|
| Protein sequence | MRRGLRRIRL PRHVMPLMAA AVALLLFALV LRSVDLAQLT RSAAALPPQV WLATLAGAFA
SFGLRAARLW LEWRSRARVD YRSCLRLFLL HNAAVAWLPL RSGEAVYPWW LHRRWQVPLH
DAAASLLWLR LQDALVLGAL TLACFGPGSI GTSTLLAVLL SLLALTLGAR LQSNGLARWD
RAMQAASSTQ TPAPARAFTR HADRLLQASR ASRGGRLAWC CCLANWLIKL AAVAWLLGAL
AGLPGGDAWR GAIAGEWAAV LPLHGPAGLG PYEAGIWLGA TVHDPAGALP WAELTGAALL
AHLCWLLAAA LGAAGALLLD PLPKTPRPRT LP
|
|---|
| |