| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3620 |
|---|
| Symbol | |
|---|
| ID | 6163299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4042381 |
|---|
| End bp | 4043316 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641666393 |
|---|
| Product | phosphoesterase PA-phosphatase related |
|---|
| Protein accession | YP_001792639 |
|---|
| Protein GI | 171060290 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.000326063 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCATGCAC CTGTCGTCGA ATTCGATCCC CTCGCCGGCC CGGCCCCGAT CCTCGGCCGC
ACCGACTGGC TGCTCTGCCT CGGCGCCCTG GCTCTGGCCG TCGGCCTGCG CGTCAGCGGC
TTCGACCGGG CGCTGTTCCA CCTGATCAAC GCCCCGGCCG CGCAGGCCGC CACGCTGTGG
TCGATGCTCA GCGTGGCCGG CCTGGGCCTG AGCGCGCTGC TGCTGTGCCT GTCGCTGCTG
CCCGGCCCGG CCCCGGCAAA CAACCGCCAT GCCCCGCTCG ACCCGGCACC GGCGGCGGCA
CTGATCGGCG GCCTGCTGCT GTGTTTCCCG ATCGGCGGCG CGCTCACGCA CCTGTTCAAG
TTCGCGCTGG CCCTGCCACG CCCGAGCGCG GTGCTGCCGG CCGGCGATCT GGTGGTGATC
GGCGACGCGC TGCTGCGCAA CTCGATGCCG TCCGGCCACG CCGTCACGGC GTTCGCGATG
GCCGGCCTGC TGACACGTTG CCTGCGGCTC GACGGCGGGC CGCGCCTGGC CGTGTTCGGC
GTGGCCGCGG CGATCGCCTG CTCGCGCATC AGCACCTCGG CACACTGGCC CAGCGACGTG
CTGGCCGGTG CCGCGCTGGG CTGGCTGGTC GCGCCGCTGG CGGTGCAGAT CGCCGGACGG
CTGGGCCTGA CGCGCTGGCT GTGCGGACGC TCGGCACACC GGCCGCTGCT GCTGGCCGCA
CTGATCCCGG CAATCGTGAT GGCGACGATG AACACCGGCT ATCCGCTGGC GCGCCCCGCG
CAATGGGCGC TGGCCGCGAT CGGGCTGCTG GCGGCCTGGC GCCAGTCCGG CCTGCTGCAC
ACGCAGCGGC GCACGCAGGC ATTCGACTGG CTGCGACGCC AGGCGCTGCG GGCCGCGGCC
GAGCTGCGTG CGGGCCGCGC CGGTGGGGCC ACTTGA
|
|---|
| Protein sequence | MHAPVVEFDP LAGPAPILGR TDWLLCLGAL ALAVGLRVSG FDRALFHLIN APAAQAATLW
SMLSVAGLGL SALLLCLSLL PGPAPANNRH APLDPAPAAA LIGGLLLCFP IGGALTHLFK
FALALPRPSA VLPAGDLVVI GDALLRNSMP SGHAVTAFAM AGLLTRCLRL DGGPRLAVFG
VAAAIACSRI STSAHWPSDV LAGAALGWLV APLAVQIAGR LGLTRWLCGR SAHRPLLLAA
LIPAIVMATM NTGYPLARPA QWALAAIGLL AAWRQSGLLH TQRRTQAFDW LRRQALRAAA
ELRAGRAGGA T
|
|---|
| |