| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3612 |
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| Symbol | |
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| ID | 6161773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4035022 |
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| End bp | 4036041 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641666385 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001792631 |
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| Protein GI | 171060282 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.00839083 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACCCCA TGCGCAAGCT CGTCTCCCTC GGCCTGATCG CCCTCTCCCT GCTCTGCGCC
ACCGGCGCCT CGGCCGCCGT CAAGCCGCTG CGCATCGGCA CCCTGGTGCC CAAGAACTCG
CTCTACCACC GCCAGCTGAT GGAGCTCGGC GAGGTCTGGC GCACGGCGCA GGGCGGCGAC
GCCAAGTACC TGGTCTTCAC CGACGGCAGC CAGGGTGGCG AGGCCGAACT GGCGCGGCGC
ATGCGCATCG GCCAGCTGCA GGGCGCGCTG CTGTCTGTCG TGGGGCTGCG CGAGATCGAG
CCGACGGTGG CGGCCCTGCA GTCGCTGCCG CTGCTGTTTC GCAGCTGGGA AGAGGTCGAC
TACGTGCGCG ACAAGATGCG CCCGGCGATG GAGAAGAAGT TCCTCGACAA GGGTTTCGTC
GTGCTCGCCT GGGGCGACGC CGGCTGGGTG CGTTTCTTCT CGAAGGAGCC GGCCTTCCGG
CCCGACGACT ACAAGAAGAT GAAGTTCTTC GCCTGGGGCT CCGAGACCGA GCAGCAGGAG
ATCATGAAGA GCCTGGGCTA CACGCCGGTG CCGCTGGAGA CCAGCGACAT CCTGCCCGCC
ATCCAGACCG GCATGATCAA CGTGGTGCCG TCGACGCCGT ATTTCGCGCT CGCCAGCCAG
GTCTACGCCA CGGCGCCCAA CATGCTCGAG ATCAACTGGG CGCCGATCGT CGGCGCGTTG
GTGGTCACCA AGAAGGCGTG GGACGAGATG AGCCCCGCCG CGCAGGATAG CGTGCGCGCC
GCCGGCGAGA AGATCGGTCT GCAGATCCGC AGCAAGGCCC GCCAGGAGGT CGACGAAGCG
GTCGACGCGA TGAAGAAACG CGGCCTGGTG GTCAACCGCC CCACGCCCGA ACAGATGCGC
GAATGGAACG AGCTGGCCGA CAAGCTCTAC CCGCGCATCC GCGGCGCGAT GGTGCCGGCC
GAGACCTTCG ATGAAGTGTT CATGCACCTG AAGGCCTACC GCGCCGGCAA GCCCCGATGA
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| Protein sequence | MNPMRKLVSL GLIALSLLCA TGASAAVKPL RIGTLVPKNS LYHRQLMELG EVWRTAQGGD
AKYLVFTDGS QGGEAELARR MRIGQLQGAL LSVVGLREIE PTVAALQSLP LLFRSWEEVD
YVRDKMRPAM EKKFLDKGFV VLAWGDAGWV RFFSKEPAFR PDDYKKMKFF AWGSETEQQE
IMKSLGYTPV PLETSDILPA IQTGMINVVP STPYFALASQ VYATAPNMLE INWAPIVGAL
VVTKKAWDEM SPAAQDSVRA AGEKIGLQIR SKARQEVDEA VDAMKKRGLV VNRPTPEQMR
EWNELADKLY PRIRGAMVPA ETFDEVFMHL KAYRAGKPR
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