| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3607 |
|---|
| Symbol | |
|---|
| ID | 6161841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4027092 |
|---|
| End bp | 4028333 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641666380 |
|---|
| Product | glycosyl transferase group 1 |
|---|
| Protein accession | YP_001792626 |
|---|
| Protein GI | 171060277 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0124021 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCC TCACGCCCGC AGGCAACCGG CTCGATGTCG AACACGCGGC GCACCGATCG
CTGCGCATCG CCGTCGTCAC CGAGACCTAT CCGCCCGAGG TCAACGGCGT GGCCCTGACG
ATGGCCCGCG TGGTCGAGGG CCTGCATCGC CGCGGCCACG ACCTGCAACT GATCCGCCCG
CGCCAGCAGG CCGGCGAGAC GGTGGCCGCG CGTGCGCGCT TCGAACAGGT GCTGGTGGGC
GGGCTGCCGA TTCCGCGTTA TCCGAACCTG CGCATGGGCC TGCCGGCCGG GCGCGCCTTG
ACGCGGCTGT GGCAGGCGCA GCGGCCCGAC GTCGTTCACA TCGCCACCGA AGGCCCGCTC
GGCTGGTCGG CGCTGCAGGC CGCGCGCGCG CTGGGCTTGC CGGTGAGTTC GGACTTCCGC
ACCAACTTCG ACGCCTACAG CCAGCACTAC GGCATCGGCT GCCTGATGCG GCCGATCCGC
GGTTATCTGC GCGCCTTCCA CAACCGCACC ACCTGCACGA TGGTGCCCAC CGAGGGGCTG
CGCCGCGAGC TCGAAGCGGC CGGTTTCGAG CGCCTGAACG TGGTCACGCG CGGTGTCGAC
ACCCGCCTGT TCATGCCGCA CCGGCGCAGC CAGGCGCTGC GCGAACAGTG GGGCGCCGGG
CCGGAGGACC TGGTGGTGAT GTGCGTGGGC CGGCTGGCGG CCGAGAAGAA CCTCGGCGTG
CTGCTGAGCG CCCACGAGGC GATCCGCCAG ATCGACCCGA ACGCGCGGCT GGTGATGGTC
GGCGACGGCC CGCAGCGTGC CGAGTTGCAG GCACGTTGCC CGCAGGCGGT GTTCGCCGGC
CAGCGCCGTG GCGACGACCT CGCGGCGCAC TACGCATCGG CCGACCTGTT CCTGTTCCCG
AGCCTGACCG AGACCTTCGG CAACGTCACC GCCGAGGCGA TGGCCAGCGG CCTGCCGGTG
CTGGCGTTCG CCTACGCCGC CGCCGCGCAG CTGATCCGCC ACGGCATCAA TGGCGCGCTG
GCGCCGGTCG ACGACACGGC GGCGTTCGTG CGCGCGGCGG TCGAACTGGC GGCCGATGCG
GCGCAGCGCC GCGACATCGG CCTGCAGGCC CGCAAGACCG CCGAAACGCT CGACTGGGAC
AGCATCGTGG CCCGCTTCGA GGGCGTGCTG CGGCAGGTGA TGCACAGCGC CGACGCGCCC
GCCACGATCA CCTTGCCGGC ACGACGTCAC CCGGTGGCTT GA
|
|---|
| Protein sequence | MNTLTPAGNR LDVEHAAHRS LRIAVVTETY PPEVNGVALT MARVVEGLHR RGHDLQLIRP
RQQAGETVAA RARFEQVLVG GLPIPRYPNL RMGLPAGRAL TRLWQAQRPD VVHIATEGPL
GWSALQAARA LGLPVSSDFR TNFDAYSQHY GIGCLMRPIR GYLRAFHNRT TCTMVPTEGL
RRELEAAGFE RLNVVTRGVD TRLFMPHRRS QALREQWGAG PEDLVVMCVG RLAAEKNLGV
LLSAHEAIRQ IDPNARLVMV GDGPQRAELQ ARCPQAVFAG QRRGDDLAAH YASADLFLFP
SLTETFGNVT AEAMASGLPV LAFAYAAAAQ LIRHGINGAL APVDDTAAFV RAAVELAADA
AQRRDIGLQA RKTAETLDWD SIVARFEGVL RQVMHSADAP ATITLPARRH PVA
|
|---|
| |