Gene Lcho_3589 details

Gene Information

• Locus tag: Lcho_3589
• ID: 6162759
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 4005563
• End bp: 4007521
• Gene Length: 1959 bp
• Protein Length: 652 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641666362
• Product: PAS/PAC sensor hybrid histidine kinase
• Protein accession: YP_001792608
• Protein GI: 171060259
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 39
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGACTGCCA CGATCCCCGA CGCCGCGAGT GATCGGCTCA AACGCCACGA GTCGCTGCAG 
GCCGGGCTCG ACCTGATCGA CCAGGGCTTC ACGCTGATCG ACGGCGATCT GCGTTTCGTC 
GCCTGGAACG AGGCCTTCAT CCGGCTGCTC GATTTCCCGC GCGAGATGGT CTTCGTCGGT 
GCGCCGTTCG AGAGCTTCAT GCGCTACAAC GCCGCGCGCG GCGAATACGG CCCCGGCGAC 
GCGCCGGCCT ACGTGGCCGA GCGCATGGCC GCGGCACGCC GCTTCACCCC GCACGAGATC 
GAACGCACCC GCCCCAACGG CCAGGTGCTG CGGGTGCGTG GCGTGCCGGT GCCGGGCATC 
GGCTTCGTCA CGCTGTATTC GGACATTACG GCGCAGAAGG CGGCCGAGCG GCAGATCCGC 
GAACACGCCG CGCTGCTCGA GGCCCGCGTG GCCGAGCGCA CCGCCGCGCT GCGCCACAGC 
GAGGCGCAGC TGCGCCTGAT CACCGACTCG ATCCCGGCAC TGGTGGCCTA TGTCGACCGC 
ACACGCTGCT ACCGCTACGT GAACCGCGGC TACCAGGAGT GGTTCGGGCT CGACCCGGCC 
CGGCCGGCGG CGATCAGCGC ACGCGAATTC CTGGGCGCTT CGACTTACGA AGGCATCAAG 
GGCCACGTGG CGCAGGCCTT CTCGGGCCAG CCGGCGAGCT TCGACTACGA ACTCACGCGC 
ATCGACGGCT CGCGCATCCG CGTGCACACC TCGCTGATCC CCGACATCGG CGCCGACGGC 
CAGGTGGCCG GCTGTTTCGA GCTCACCTTC GACAACACCG AACACCTGCG TGCGCAGGAG 
CTGGTGCTGC GGGCGCAGAA GATGGAGGCG CTGGGCCAGC TCACCGGAGG GCTGGCGCAC 
GACTTCAACA ACCTGCTGAC CGTGATCATC GGCAACCTCG GCATCCTGAC CGAGCAGCGA 
CGTGACACCG CCGACACCGC CGAGTTCGTC GCCCCGGCGC TGCAGGCCGC GCGGCGTGGC 
GCCGAGCTGA TCCGGCGCCT GCTGAGCTTT GCGCGCCAGC AGCCGCTCGC GGCGGTGGCG 
GTGAATGTCC ACCAGGCCTT GATCGACGTC GCACGGCTGG TACGCCGCTC GCTGCCGGAG 
AGTTTGCAGA TCGAGGTGCA GGCGCAATCC GGGCTGTGGA TCTGGATCGA CCCGGCCGAA 
CTCGAGACCG CGTTGCTCAA CCTGCTGCTC AATGCCCGCG ATGCCACCGC GGGCAACGGC 
CGGGTGTCGA TCCGCGCCAG CGCCGCCGAG CTGCTGCCCG ATGCCGCCGG CGACCGTGGA 
CTGGCGCCCG GACGCTACGT GCGCATCGAT GTGAGCGACG ACGGCTGCGG CATGGACGAG 
GCGACGCGCT CCCGCCTGTT CGACCCCTTT TTCACCACCA AGCCGCCAGG ATCGGGCACC 
GGGCTCGGCA TGGCGATGGT CTACGGCTTC GTTAACCAGT CGGGCGGTGC GATCGACGTC 
GAAAGCGCAC CCGACCGCGG CACGACGATC TCGATCTGGC TGCCGGCGAC CGATGCGCCT 
GACGACGAAG CCCTCGACGT GCCAGCCGAG TTGCCGCCGG GCGCGCAGCC GCAGGGCCTG 
GCGCTGCTGG TCGAAGACGA TGCTGCGGTG CGCCAGGTGG TGCGCCACAA CCTGCTCGCG 
CTGGGCTATG CGGTGCTGGA GGCCGGCAAC GGCGCCGAGG CGCGCCAGAT GCTCGCGCAT 
GCGCCTGGCA TCACCTTGCT GTTGACCGAC GTGGTGATGC CCGGCGGTGT CGACGGCCGC 
GACCTGGCCC GCGAGGCCCG CGACCTGCAC CACGTGCCGC GGGTGCTGCT GATGAGCGGC 
CACGCCCCGG CGCGCGCCGA AGCCGGCGAT CTGCCCTTGT TGCGCAAACC CTTCAGCGCC 
GCCGAGCTGG CGGCGGCCTT GCGCGAACCG CGCGAGTGA 

 

Protein sequence

MTATIPDAAS DRLKRHESLQ AGLDLIDQGF TLIDGDLRFV AWNEAFIRLL DFPREMVFVG 
APFESFMRYN AARGEYGPGD APAYVAERMA AARRFTPHEI ERTRPNGQVL RVRGVPVPGI 
GFVTLYSDIT AQKAAERQIR EHAALLEARV AERTAALRHS EAQLRLITDS IPALVAYVDR 
TRCYRYVNRG YQEWFGLDPA RPAAISAREF LGASTYEGIK GHVAQAFSGQ PASFDYELTR 
IDGSRIRVHT SLIPDIGADG QVAGCFELTF DNTEHLRAQE LVLRAQKMEA LGQLTGGLAH 
DFNNLLTVII GNLGILTEQR RDTADTAEFV APALQAARRG AELIRRLLSF ARQQPLAAVA 
VNVHQALIDV ARLVRRSLPE SLQIEVQAQS GLWIWIDPAE LETALLNLLL NARDATAGNG 
RVSIRASAAE LLPDAAGDRG LAPGRYVRID VSDDGCGMDE ATRSRLFDPF FTTKPPGSGT 
GLGMAMVYGF VNQSGGAIDV ESAPDRGTTI SIWLPATDAP DDEALDVPAE LPPGAQPQGL 
ALLVEDDAAV RQVVRHNLLA LGYAVLEAGN GAEARQMLAH APGITLLLTD VVMPGGVDGR 
DLAREARDLH HVPRVLLMSG HAPARAEAGD LPLLRKPFSA AELAAALREP RE