| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3584 |
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| Symbol | |
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| ID | 6162870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4001330 |
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| End bp | 4002814 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666357 |
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| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
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| Protein accession | YP_001792603 |
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| Protein GI | 171060254 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.914816 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCCA TCTGGATCGT TGACGACGAC CAATCCATCC GCTTCGTTCT GGAGAAGGCA
CTGGCCCGCG AGGAGCTGCC GGTGCGCAGC TTCACCAATC CACGCGATGT GCTGCTCGCG
CTCGAGGACG ACTCGCCGCA GGTGCTGGTG AGCGACATCC GCATGCCCGG CGGCTCGGGC
ATCGACCTGC TGGCCAAGGT CAAGGAGCGC CACCCCGGCC TGCCGGTCAT CATCATGACC
GCCTACTCCG ACCTCGACAG CGCCGTCTCG GCCTTCCAGG GCGGCGCCTT CGAGTACCTG
CCCAAACCCT TCGACCTGCC GAAAGCGGTC GAGCTGATCC GCCGCGCGGT CGACGAGAGC
CTGCGCGAGG AAAGTGTCGA CGAGCACGTC ACCGAAGTGC CCGAGATGCT CGGCCAGGCG
CCGGCGATGC AGGACGTGTT CCGCGCCATC GGCCGTCTCA GCCAGAGCAA CGTCACGGTG
CTGATCACCG GCGAATCGGG CTCGGGCAAG GAGCTGGTGG CGCGCGCGCT GCACAAGCAC
AGCCAGCGCA GCGCCGGGCC GTTCGTGGCG ATCAACACGG CGGCGATCCC GAAGGACCTG
CTCGAGAGCG AACTGTTCGG CCACGAGCGC GGCGCCTTCA CCGGCGCGCA GGCAACGCGG
CGCGGCCGCT TCGAGCAGGC CGAAGGTGGC ACGCTGTTCC TCGACGAGAT CGGCGACATG
CCGTTCGACC TGCAGACCCG CCTGCTGCGG GTGCTCAGCG ATGGCCAGTT CTACCGCGTC
GGCGGCCATT CGCCGCAGAA GGCCAGCGTG CGGGTGATTG CCGCGACCCA CCAGAACCTC
GAGGAGCGGG TGCGCGACGG CGCCTTCCGC GAAGACCTGT TCCACCGCCT CAACGTCATC
CGCCTGCGCC TGCCGGCGCT GCGCGAACGG CGCGAGGACA TCCCCGGGCT GGTCCGCCAT
TTCCTGCAGC GCAGCGCCAA GGATCTCGGC GGCGAGCCCA AGCGCCTGTC GGACGCGGCG
ATGGTCCTGA TGGCGAATTT CGACTTCCCC GGCAACGTGC GCCAGCTCGA GAACATCTGC
CACTGGCTGA CCGTGATGGC GCCGGCCCAG GTGGTCGACC CGAAGGACCT GCCGCCCGAG
GTGCTCGGCA CCCTGCCGGC GATGGCGCCT GCGGGTGGCC ACGGCCTGGT GTCGAGCCCT
CCGATGCTGG CGCAACCGGG CAGCGGCAGC GCGGCGACCG AAGCGCCACG CAGCGCGCCG
CCGGCGGTCG GCAGCAACTG GCTCGGCGAC CTCGAACTCG AGGCCCGCGC CCTGCTCGAC
AGCGGCCAGC CCGACGTCTG GGATCACCTG ACCCGGCTGT TCGAGGGCCG GCTGATCCAG
ACCGCGCTGG CGATCACCAA GGGCCGGCGC ATCGAGGCGG CACACAAGCT CGGCATCGGC
CGCAACACCA TCACGCGCAA GATCCAGGAA CTCGGCCTGG ATTGA
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| Protein sequence | MKPIWIVDDD QSIRFVLEKA LAREELPVRS FTNPRDVLLA LEDDSPQVLV SDIRMPGGSG
IDLLAKVKER HPGLPVIIMT AYSDLDSAVS AFQGGAFEYL PKPFDLPKAV ELIRRAVDES
LREESVDEHV TEVPEMLGQA PAMQDVFRAI GRLSQSNVTV LITGESGSGK ELVARALHKH
SQRSAGPFVA INTAAIPKDL LESELFGHER GAFTGAQATR RGRFEQAEGG TLFLDEIGDM
PFDLQTRLLR VLSDGQFYRV GGHSPQKASV RVIAATHQNL EERVRDGAFR EDLFHRLNVI
RLRLPALRER REDIPGLVRH FLQRSAKDLG GEPKRLSDAA MVLMANFDFP GNVRQLENIC
HWLTVMAPAQ VVDPKDLPPE VLGTLPAMAP AGGHGLVSSP PMLAQPGSGS AATEAPRSAP
PAVGSNWLGD LELEARALLD SGQPDVWDHL TRLFEGRLIQ TALAITKGRR IEAAHKLGIG
RNTITRKIQE LGLD
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