| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3583 |
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| Symbol | |
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| ID | 6162869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4000203 |
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| End bp | 4001276 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641666356 |
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| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
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| Protein accession | YP_001792602 |
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| Protein GI | 171060253 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.998246 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCTGT TGCGAGGCAA CCCCTACGAC GCCTTCGACC ACCTCGCCAC GATGGTGGCG
GTGCTCAAGG CCGACGGCCG CTGCGTCTAC GCCAACGCCG CCTTCGAGGC CGTGCTGGGC
CTGCCGCGGC GGGCACTGCA GAAGTCGCGC ATGTTCGACT GGTTCGTCGA GTCGCACCTG
CTGCAGAGCA CCTTCCGCGC GGTGGTCGAC AACGAATACA GCACCGGCCG GCTCGAGGCG
CTGCTGCGCC GCGCGCCCGG CAACAACGGC GATCCGCTGC CGGTGCATGC GATCGTCACG
CAGATCGACC ACGGCGAGCA GGTGCTGCTG GAGCTGGTCG AGATCGAGCA GCAGTCGCGC
CAGGATCGCG AGACCCGCAC GCTCGACCAG GTCCGCGTGA CCAAGGAGCT GATCCGCAAC
CTGGCGCACG AGATCAAGAA TCCGCTGGGC GGCATCCGCG GCGCGGCGCA ACTGCTCGAG
ATGGAGCTCG ACGACAAGTC GCTGACCGAA TACACCCAGG TCATCATCCA CGAGGCCGAC
CGCCTGCAGG CGCTGGTCGA CCGGCTGCTG GCGCCGCACC GGCGCCCGCA CATCGTCGCC
GAGGTCAACA TCCACGAGGT GCTGGAGCGC GTGCGCTCGC TGGTGCTGGC CGAGTTCTCG
AAGGGGCTGG TGATCGTGCG CGACTACGAC GCCTCGCTGC CCGAGTTCCG CGGCGACCGC
GAGCAGCTGA TCCAGGCGGT GCTCAACATC ACCCACAACG CCGCGCTGGC GCTGACCCAG
CGCCGCCAGG ACGGCGACGC CCGCATCGTG CTGCGCACCC GCGCCGCCCG CCAGGTCACG
ATCGACCGCA CCCGCTATCG ACTGGCACTG GACTTGCATA TCGAGGACAA CGGACCCGGC
GTGCCCGCCG AAATCCGCGA TCGCATCTTC TTCCCGCTGG TCTCCGGCCG GGACGGTGGA
TCAGGCCTCG GATTGACGCT GGCACAGGAC TTCATCCAGC AGCACCACGG CCTGATCGAG
TGTGAAAGCG AAGCCGGGCG CACCGTGTTC AAGATACAGA TTCCGCTGCC TTAG
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| Protein sequence | MSLLRGNPYD AFDHLATMVA VLKADGRCVY ANAAFEAVLG LPRRALQKSR MFDWFVESHL
LQSTFRAVVD NEYSTGRLEA LLRRAPGNNG DPLPVHAIVT QIDHGEQVLL ELVEIEQQSR
QDRETRTLDQ VRVTKELIRN LAHEIKNPLG GIRGAAQLLE MELDDKSLTE YTQVIIHEAD
RLQALVDRLL APHRRPHIVA EVNIHEVLER VRSLVLAEFS KGLVIVRDYD ASLPEFRGDR
EQLIQAVLNI THNAALALTQ RRQDGDARIV LRTRAARQVT IDRTRYRLAL DLHIEDNGPG
VPAEIRDRIF FPLVSGRDGG SGLGLTLAQD FIQQHHGLIE CESEAGRTVF KIQIPLP
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