| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3575 |
|---|
| Symbol | |
|---|
| ID | 6163145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3991486 |
|---|
| End bp | 3992493 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641666348 |
|---|
| Product | basic membrane lipoprotein |
|---|
| Protein accession | YP_001792594 |
|---|
| Protein GI | 171060245 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.53224 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATGA CGTTCACCCG ACTCTCTCGG CGCCACCTGA TCGCGCTCGG CCTGGCCGCC
GCCACCCTGG CCCCCGGCCT GGCCGCCGCG CAGGCCAAGC TCAAGGTCGC CGCGATCTAC
ACCGTGCCCT TCGAGCAGCA ATGGGTCAGC CGCATCCACA AGGCGCTCAA GGCCGCCGAG
GCGCGTGGCG AGATCGACTA CAAGGCGAGC GAAAACGTCG CCAACGCCGA CTACGAGCGC
GTGATGCGCG AGTACGCCAA CGGCGGCAAT GCACTGATCG TCGGCGAGGT GTTCGGCGTC
GAGGCCGCCG CACGCAAGGT GGCCAAGGAC TTCCCGAAGG TGTCGTTCCT GATGGGCTCG
TCGGGCAAGC CGCAGGCGCC CAACTTCTCG GTGTTCGACA ACTACATCCA GGACCCGGCG
TATCTGAGCG GCATGGTCGC CGGCGGCATG ACCAAGTCCA ACAAGATCGG CATGGTCGGC
GGCTTCCCGA TCCCCGAGGT CAATCGCCTG ATGAACGCCT TCATGGCCGG CGCCAAGGAG
GTGAACCCGA AGGTCGAGTT CACGGTGTCC TTCATCAACA GCTGGTTCGA TCCGCCCAAG
GCCAAGGAAG CCGCCTTCGC GATGATCGAC AAGGGCGCCG ACGTGATGTA TGCCGAGCGT
TTCGGCGTCA GCGACGCGGC ACAGGAGCGC AAGGTGCTGG CGATCGGCAA CGTCATCAAC
ACGCAGGACA AGTACCCCGA CACCGTGGTC GCCTCGGCGC TGTGGCACAT GGAGCCCAGC
ATCGACCGCG CGCTCGGCCT GGTCAAGACC GGCAAGTTCA CCGCCGAGGA TTACGGGCCG
TATTCGCTGA TGAAGAACAA GGGCTCCGAA CTGGCGCCGC TGGGCAGCTT CGAGAAGAAG
GTGCCGGCCG ACGTGGTGGC CAAGATGCGC GCCAAGGAGA AGGCGATCCT GGCCGGCACG
TTCACGGTCA AGGTGGACGA CTCGCAGCCC AAGTCCACGG CCAAGTGA
|
|---|
| Protein sequence | MTMTFTRLSR RHLIALGLAA ATLAPGLAAA QAKLKVAAIY TVPFEQQWVS RIHKALKAAE
ARGEIDYKAS ENVANADYER VMREYANGGN ALIVGEVFGV EAAARKVAKD FPKVSFLMGS
SGKPQAPNFS VFDNYIQDPA YLSGMVAGGM TKSNKIGMVG GFPIPEVNRL MNAFMAGAKE
VNPKVEFTVS FINSWFDPPK AKEAAFAMID KGADVMYAER FGVSDAAQER KVLAIGNVIN
TQDKYPDTVV ASALWHMEPS IDRALGLVKT GKFTAEDYGP YSLMKNKGSE LAPLGSFEKK
VPADVVAKMR AKEKAILAGT FTVKVDDSQP KSTAK
|
|---|
| |