Gene Lcho_3571 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3571 
Symbol 
ID6161001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3988623 
End bp3989174 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content71% 
IMG OID641666344 
Productphenylacetate-CoA oxygenase, PaaJ subunit 
Protein accessionYP_001792590 
Protein GI171060241 
COG category[R] General function prediction only 
COG ID[COG2151] Predicted metal-sulfur cluster biosynthetic enzyme 
TIGRFAM ID[TIGR02159] phenylacetate-CoA oxygenase, PaaJ subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.139569 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCATCG AGGCCGCGAG CGCCGACACG GCCGGGGCGC GCATCGCTCG CGCCTGGCAG 
GTGCTGGCCG AGGTGCCCGA TCCCGAGGTG CCCGCCATCT CCGTCACCGA TCTGGGCATC 
GTGCGCGAGG TCAACGCGGT CGACGGCGGC GGCATCGAGG TGGTGCTGAC GCCGACCTAT 
TCCGGCTGCC CGGCCACCGA GGTGATCGAA CGCAGCGTGC TCGATGCGAT CGAGGCCGCC 
GGCCTGGGCC CGGCCAGCGC GCGCATGCGT CGCGACCCGG CCTGGACTAC CGACTGGATC 
AGCGCCGACG GTAAGCGCAA GCTGCGCGAG TACGGCATCG CACCACCCGG CCCGACCGAG 
CCGGGCGCTG CGGTGGGAAT GACCGCGGTG GTGCGCTTCC AGCCACGCCG CGCCGCGCTG 
ATCAACATCG CCTGCCCGCG CTGCGGCAGC GATCACACCG AACGCCTGTC GGCCTTCGGA 
TCCACCGCCT GCAAGGCGTT GTGGCGCTGT CTGGCCTGCC GCGAACCGTT CGAACAATTC 
AAGCCTATTT GA
 
Protein sequence
MTIEAASADT AGARIARAWQ VLAEVPDPEV PAISVTDLGI VREVNAVDGG GIEVVLTPTY 
SGCPATEVIE RSVLDAIEAA GLGPASARMR RDPAWTTDWI SADGKRKLRE YGIAPPGPTE 
PGAAVGMTAV VRFQPRRAAL INIACPRCGS DHTERLSAFG STACKALWRC LACREPFEQF 
KPI